Table 2 Sites that experienced episodic positive selection, identified using the MEME test
Site | alpha | beta- | beta+ | p-value | Number of branches under selection | Protein | Position in protein |
|---|---|---|---|---|---|---|---|
620 | 0 | 0 | 208.26 | < 0.01 | 1 | E | 340 |
643 | 0.42 | 0.15 | 252.91 | < 0.01 | 3 | E | 363 |
982 | 0.27 | 0.1 | 576.29 | < 0.01 | 2 | NS1 | 207 |
1005 | 0 | 0 | 1026.38 | < 0.01 | 1 | NS1 | 230 |
1407 | 0 | 0 | 10,000 | < 0.01 | 1 | NS2A | 72 |
1860 | 0 | 0 | 253.18 | < 0.01 | 1 | NS2A | 119 |
2399 | 0.66 | 0 | 10,000 | < 0.01 | 3 | NS2B | 62 |
2487 | 0.11 | 0.02 | 10,000 | < 0.01 | 1 | NS2B | 92 |
2610 | 0 | 0 | 902.92 | < 0.01 | 1 | NS3 | 15 |
1199 | 0 | 0 | 63.51 | 0.01 | 2 | NS3 | 384 |
1246 | 0 | 0 | 341.74 | 0.01 | 4 | NS3 | 385 |
1438 | 1.22 | 1.22 | 1009.51 | 0.01 | 1 | NS4B | 96 |
1859 | 0.92 | 0.19 | 4896.97 | 0.01 | 1 | NS4B | 244 |
1489 | 0 | 0 | 3.14 | 0.03 | 5 | NS5 | 119 |
2659 | 1.03 | 0.28 | 196.38 | 0.03 | 2 | NS5 | 168 |
3371 | 0 | 0 | 19.33 | 0.04 | 2 | NS5 | 380 |