Table 1 Statistics for gene prediction and assembly of Montipora, Astreopora and other coral genomes

References

This study

Shinzato et al. [23]

This study

Shinzato et al. [23]

Shumaker et al. [28]

Helmkampf et al. [27]

This study

Shinzato et al. [23]

Shinzato et al. [23]

Shinzato et al. [23]

Ying et al. [25]

Genome assembly

Assembly length

640,828,888

65,27,28,006

63,05,35,801

64,33,12,941

88,57,04,498

61,45,09,607

37,34,03,447

37,34,03,447

40,30,90,051

41,58,26,927

38,65,99,652

No. of scaffolds

3532

4925

3589

5162

3043

27,865

1149

1149

1538

955

3869

N50

9,38,091

8,98,511

11,68,433

11,32,316

5,40,623

1,85,537

16,34,277

16,34,277

11,65,818

18,56,312

4,94,532

Genes

No. of protein coding genes

29,158

21,983

29,424

21,370

63,227

36,691

25,406

27,576

22,905

22,327

23,710

Avg. length

12,905

15,343

12,546

15,531

6507^b

4048^b

9550

5503^b

10,298

10,445

9294

Transcripts

Avg. no. of CDS (exon) per gene

6.6 (7.2)

7.7 (7.9)

6.5 (7.1)

7.8 (8.0)

4.5 (NA)

3.62 (NA)

6.0 (6.4)

5.0 (NA)

7.2 (8.1)

6.6 (8,5)

7.2 (7.5)

Avg. CDS (exon) length per gene (bp)

1411 (2,033)

1871 (2139)

1390 (1994)

1876 (2143)

1162 (NA)

1103 (NA)

1647 (2132)

1426 (NA)

1562 (2383)

1435 (2415)

1600 (2404)

Avg. CDS (exon) length

215 (280)

244 (271)

215 (280)

241 (270)

259 (NA)

305 (NA)

230 (279)

283 (NA)

216 (294)

217 (285)

312 (317)

Tortal CDS (exon) length (Mbp)

41 (59)

41 (45)

41 (59)

40 (44)

73 (NA)

40 (NA)

42 (54)

41 (NA)

36 (55)

32 (54)

38 (57)

BUSCO completeness (v5.0)

Complete

93.3%

87.9%

91.2%

84.1%

93.4%^b

64.2%^b

94.5%

78.4%^b

92.9%

89.3%

94.7%

Single-copy

92.5%

87.3%

89.8%

83.6%

75.1%^b

63.7%^b

93.2%

77.7%^b

92.2%

88.6%

93.7%

Duplicated

0.8%

0.6%

1.4%

0.5%

18.3%^b

0.5%^b

1.3%

0.7%^b

0.7%

0.7%

1.0%

Fragmented

4.1%

5.7%

4.5%

7.2%

4.1%^b

13.5%^b

3.1%

7.7%^b

2.9%

4.7%

2.7%

Missing

2.6%

6.4%

4.3%

8.7%

2.5%^b

2.5%^b

2.4%

13.9%^b

4.2%

6.0%

2.6%