Whole genome based insights into the phylogeny and evolution of the Juglandaceae

Zhou, Huijuan; Hu, Yiheng; Ebrahimi, Aziz; Liu, Peiliang; Woeste, Keith; Zhao, Peng; Zhang, Shuoxin

doi:10.1186/s12862-021-01917-3

BMC Ecology and Evolution

Table 1 Taxa and voucher information for plant material that provided Juglandaceae plastomes

From: Whole genome based insights into the phylogeny and evolution of the Juglandaceae

Species	Total length	GC %	LSC	SSC	IR	Raw reads	Mapped reads	Sequencing Platform	GenBank No.
Alfaropsis roxburghiana	161,164	36	90,477	18,531	26,087	10,435,597	261,440	Illumina Hiseq2500	MH188300
Carya cathayensis	160,300	36.2	89,715	18,553	26,016	7,391,021	92,365	Illumina Hiseq2500	MH189594
Carya hunanensis	160,397	36.2	89,807	18,532	26,029	9,303,790	94,317	Illumina Hiseq2500	MH188303
Carya illinoensis	160,585	36.2	90,030	18,435	26,060	9,652,336	70,573	Illumina Hiseq2500	MH188302
Carya kweichwensis	159,780	36.3	89,264	18,430	26,043	9,087,431	236,036	Illumina Hiseq2500	MH188301
Carya sinensis	160,195	36.3	89,541	18,538	26,085	13,878,699	420,540	Illumina Hiseq2500	KX703001
Cyclocarya paliurus	160,562	36.1	90,007	18,477	26,039	9,073,816	277,193	Illumina Hiseq2500	KY246947
Juglans ailantifolia	160,353	36.1	89,931	18,376	26,023	12,918,979	145,907	Illumina Hiseq2500	MH188299
Juglans cathayensis	159,730	36.1	89,333	18,351	26,023	13,178,238	344,843	Illumina Hiseq2000	KX671976
Juglans cinerea	160,193	36.2	89,719	18,406	26,034	13,018,105	720,145	Illumina Hiseq2500	MH188298
Juglans hindsii	159,929	36.2	89,597	18,296	26,018	29,975	6,646	Roche 454	MH188297
Juglans hopeiensis	159,714	36.1	89,872	18,406	26,036	12,382,845	517,928	Illumina Hiseq2000	KX671977
Juglans major	160,221	36.1	89,766	18,372	26,034	9,407,594	513,705	Illumina Hiseq2500	MH188296
Juglans mandshurica	159,729	36.1	89,331	18,346	26,023	11,805,821	527,970	Illumina Hiseq2000	KX671975
Juglans microcarpa	160,065	36.2	89,637	18,383	26,022	85,030	22,781	Roche 454	MH188295
Juglans nigra	160,301	36.1	89,840	18,393	26,034	13,178,283	434,844	Illumina Hiseq2500	MH188294
Juglans regia	160,367	36.1	89,872	18,425	26,035	3,511,124	1,713,581	Illumina Miseq	KT963008
Juglans sigillata	160,350	36.1	89,872	18,406	26,036	12,225,897	402,317	Illumina Hiseq2000	KX424843
Platycarya strobilacea	158,281	36.1	87,990	18,399	25,946	12,345,252	79,584	Illumina Hiseq2500	MH189595
Pterocarya delavayi	160,174	36.2	89,640	18,510	26,012	9,295,098	179,137	Illumina Hiseq2500	MH188304
Pterocarya fraxinifolia	160,246	36.2	89,783	18,437	26,013	9,731,800	187,013	Illumina Hiseq2500	MH188291
Pterocarya hupehensis	159,770	36.2	89,229	18,505	26,018	9,605,591	273,616	Illumina Hiseq2500	MH188293
Pterocarya insignis	160,207	36.2	89,728	18,476	26,006	9,805,922	156,606	Illumina Hiseq2500	MH188292
Pterocarya macroptera	159,941	36.2	89,517	18,410	26,007	9,164,994	113,662	Illumina Hiseq2500	MH188290
Pterocarya stenoptera	160,202	36.2	89,727	18,433	26,021	11,542,884	186,936	Illumina Hiseq2500	MH188289
Pterocarya tonkinensis	160,096	36.2	89,600	18,482	26,007	7,449,017	160,611	Illumina Hiseq2500	MH188288

LSC large single copy, SSC small single copy, IR inverted repeat. Length of regions is given in number of base pairs (bp)

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ISSN: 2730-7182

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