Genomic insights into natural selection in the common loon (Gavia immer): evidence for aquatic adaptation

Gayk, Zach G.; Le Duc, Diana; Horn, Jeffrey; Lindsay, Alec R.

doi:10.1186/s12862-018-1181-6

BMC Ecology and Evolution

Table 1 Common (Gavia immer) and Red-throated loon (Gavia stellata) genes with the highest statistical support indicating either positive selection or purifying selection, indicated by faster or slower evolution under COL_Gst_trend, respectively. Common loon is abbreviated COL and Red-throated loon is abbreviated Gst

From: Genomic insights into natural selection in the common loon (Gavia immer): evidence for aquatic adaptation

GeneID	seq_length	lnl__model 0	ω model 0	lnl_model 2	ω background	COL_Gst	LRT	COL_Gst_trend
EPN3	327	− 1152.7014	0.01707	− 1104,593	0.01782	0.01984	96.217	faster
ZBTB5	249	− 672.25763	0.20841	− 661,74,052	0.08824	1258	21,034	faster
ASB13	IS 9	− 433.96493	0.2276	− 423.50404	0.03184	0.93344	20.922	faster
IL4I1	771	− 2150,5564	0.11603	− 2142,9682	0.09269	0,45,843	15.176	faster
ZSWIM8	342	− 438,89,839	0.05848	− 431,37,865	0.01099	2.00206	15.04	faster
TUBB3	228	− 670.71185	0.00912	−665,15,958	0.01716	0.00017	11.105	slower
315,773	228	−821.91841	0.01812	− 816.56462	0.02302	0.00154	10.708	slower
FBX02	252	− 702.0616	0.51324	− 696.7442	0,62,797	0,0001	10.635	slower
SYT11	354	− 831.44038	0.0465	− 826.3884	0.03646	1,27,058	10.104	faster
cKir2.3	906	− 1761.5536	0.02201	− 1756.6812	0.00922	0.11328	9.7449	faster
SEMA5A	258	− 624.89875	0.28427	−620.04765	0.16011	0.91611	9.7022	faster
PNPLA6	210	− 651.71811	0.01012	−646.99188	0.00121	0.03078	9.4525	faster
CENPJ	399	− 985.68333	0.52198	− 980.97548	0.71507	0.11002	9.4157	slower
POLR3A	219	−452.46578	0.03422	− 447.92294	0.0001	0.1951	9.0857	faster
TBC1D8	204	− 648.48472	0.0926	− 640.07889	0.0001	3.96808	16.812	faster
C5RNP3	234	−755,24,789	0.05295	− 748.12504	0.0001	0.69521	14.246	faster
PHAX	246	− 550,29,897	0.10575	− 543,21,977	0.0197	0.32286	14.158	faster
PCD H17	267	− 501.13075	0.0589	− 494.61423	0.0001	0.28444	13.033	faster
NT5C1A	234	− 446,31,726	0.01154	− 441,0027	0.0001	0,2497	10,629	faster
PITX2	354	− 1137.3695	0.03826	−1132,3063	0,01375	0.79758	10.126	faster
LGR5	354	− 662.90136	0.07076	− 658,29,332	0.02553	0.54755	9.2161	faster
MON1A	705	− 1313.0707	0.00959	− 1308.521	0.00345	0.05225	9.0994	faster
KCNJ5	615	− 1150.454	0.02875	− 1145,9671	0,01487	0.34767	8,9738	faster
CDH7	234	−465.08493	0.12236	− 460.98436	0.0509	1.84634	8.2011	faster
SCN2A	708	− 1625.9186	0.06846	− 1621.8739	0.04567	0.17324	8.0892	faster

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ISSN: 2730-7182

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