Fig. 4From: Evolutionary history of endemic Sulawesi squirrels constructed from UCEs and mitogenomes sequenced from museum specimensComparative analysis of UCEs, with several trees provided based on various partitioning schemes. All trees were generated with Maximum Likelihood via PHyML except F. a the complete matrix of 28 loci, (b) a tree of the 28 ‘most informative’ loci, including loci with the highest number of informative sites per locus. c a tree of 34 loci where Prosciurillus murinus and P. abstrusus were always present, (d) the tree containing 362 loci, which included at least 9 of the 11 taxa, and at least three informative sites per locus. e A tree of 2410 loci containing at least 9 of 11 taxa and at least a single informative site per locus. f ASTRAL species tree estimation, generated from the 362 loci dataset. Additional details about partitioning are found in the Methods Back to article page