Figure 1

Maximum likelihood phylogenetic tree based on concatenated CNEs (594,763 base-pairs) for 26 mammalian species with ≥90% sequence coverage of the 3,110 CNEs downloaded from CONDOR. All nodes were recovered with 100% bootstrap support, unless otherwise shown. Bat branches are coloured as follows: Old World fruit bats (black); echolocating Yinpterochiroptera (green); Yangochiroptera (brown). Major clades are labelled as follows: Primates (A); Chiroptera (B); Cetartiodactyla (C) and Carnivora (D).