From: Adaptive evolution of Hox-gene homeodomains after cluster duplications
Model | ℓ | Parameters | Positive Sites | Sig. |
---|---|---|---|---|
Hox1 | ||||
M1a | -707.37 | p0 = 0.982, p1 = 0.018; ω0 = 0.0017, ω1 = 1 | Not Allowed | |
MA | -697.04 | P 0+1 = 0.935, p 2 = 0.065; ω 0/1 = 0.0034/1, ω 2 = 999 | 3 (PP > 0.99) | P << 0.001 |
Hox2 | ||||
M1a | -800.91 | p0 = 0.985, p1 = 0.015; ω0 = 0.0059, ω1 = 1 | Not Allowed | |
MA | -794.72 | p 0+1 = 0.981, p 2 = 0.019; ω 0/1 = 0.0062/1, ω 2 = 17.98 | 1 (PP > 0.95) | P < 0.005 |
Hox3 | ||||
M1a | -1684.44 | p0 = 0.979, p1 = 0.021; ω0 = 0.0223, ω1 = 1 | Not Allowed | |
MA | -1647.20 | p 0+1 = 0.833, p 2 = 0.167; ω 0/1 = 0.0116/1, ω 2 = 170.6 | 12 (PP > 0.95) | P << 0.001 |
Hox4 | ||||
M1a | -1547.08 | p0 = 0.987, p1 = 0.013; ω0 = 0.0057, ω1 = 1 | Not Allowed | |
MA | -1538.64 | p0+1 = 0.987, p2 = 0.013; ω0/1 = 0.0046/1, ω 2 = 3.70 | 1 (PP > 0.99) | P << 0.001 |
Hox5 | ||||
M1a | -1280.06 | p0 = 1.0, p1 = 0.0; ω0 = 0.0119, ω1 = 1 | Not Allowed | |
MA-A | -1272.42 | p 0+1 = 0.897, p 2 = 0.103; ω 0/1 = 0.008/1, ω 2 = 1.11 | 1 (PP > 0.95) | P << 0.001 |
MA-B | -1273.35 | p 0+1 = 0.925, p 2 = 0.075; ω 0/1 = 0.0085/1, ω 2 = 477.6 | None Identified | P << 0.001 |
MA-C | -1269.82 | p 0+1 = 0.903, p 2 = 0.097; ω 0/1 = 0.0106/1, ω 2 = 76.7 | 4 (PP > 0.90) | P << 0.001 |
Hox6 | ||||
M1a | -1309.19 | p0 = 1.0, p1 = 0.0; ω0 = 0.0155, ω1 = 1 | Not Allowed | |
MA | -1295.24 | p0+1 = 0.754, p2 = 0.246; ω0/1 = 0.0108/1, ω 2 = 999 | 10 (PP > 0.90) | P << 0.001 |
Hox7 | ||||
M1a | -698.86 | p0 = 1.0, p1 = 0.0; ω0 = 0.0029, ω1 = 1 | Not Allowed | |
MA | -969.89 | No Reliable Results | n.a. | |
Hox8 | ||||
M1a | -1889.89 | p0 = 0.985, p1 = 0.015; ω0 = 0.011, ω1 = 1 | Not Allowed | |
MA | -1086.37 | p0+1 = 0.949, p2 = 0.051; ω0/1 = 0.011/1, ω 2 = 1.0 | 1 (PP > 0.95) | P < 0.05 |
Hox9 | ||||
M1a | -1389.70 | p0 = 1.0, p1 = 0.0; ω0 = 0.0101, ω1 = 1 | Not Allowed | |
MA-A | -1386.83 | p0+1 = 0.878, p2 = 0.122; ω0/1 = 0.0089/1, ω 2 = 1.0 | None Identified | P = 0.057 |
MA-B | -1380.29 | No Reliable Results | n.a. | |
MA-C | -1269.82 | p 0+1 = 0.903, p 2 = 0.097; ω 0/1 = 0.0106/1, ω 2 = 76.7 | 4 (PP > 0.90) | P << 0.001 |
MA-D | -1389.19 | p0+1 = 0.9, p2 = 0.1; ω0/1 = 0.0095/1, ω 2 = 1.0 | 1 (PP < 0.90) | n.s. |
Hox10 | ||||
M1a | -1747.75 | p0 = 0.895, p1 = 0.105; ω0 = 0.0139, ω1 = 1 | Not Allowed | |
MA | -1747.20 | p0+1 = 0.853, p2 = 0.47 ω0/1 = 0.0123/1, ω 2 = 1.0 | 1 (PP < 0.90) | n.s. |
Hox11 | ||||
M1a | -1210.27 | p0 = 0.982, p1 = 0.018; ω0 = 0.0017, ω1 = 1 | Not Allowed | |
MA | -1208.15 | p0+1 = 0.973, p2 = 0.029; ω0/1 = 0.0092/1, ω 2 = 1.0 | None Identified | n.s. |
Hox12 | ||||
M1a | -1092.80 | p0 = 1.0, p1 = 0.0; ω0 = 0.0229, ω1 = 1 | Not Allowed | |
MA | 1092.52 | p0+1 = 0.973, p2 = 0.027; ω0/1 = 0.0226/1, ω 2 = 1.0 | None Identified | n.s. |
Hox13 | ||||
M1a | -1747.34 | p0 = 1.0, p1 = 0.0; ω0 = 0.023, ω1 = 1 | Not Allowed | |
MA | -1731.97 | p 0+1 = 0.918, p 2 = 0.082; ω 0/1 = 0.022/1, ω 2 = 6.96 | 3 (PP > 0.90) | P << 0.001 |