From: Reduced MHC and neutral variation in the Galápagos hawk, an island endemic
Sequence set | Model | ln L | Parameter estimates | Positively selected sites | LRT statistic |
---|---|---|---|---|---|
All sequences | M1a | -1151.58 | p = 0.775 (p1 = 0.225), ω = 0.071, ω1 = 1 | not allowed | |
M2a | -1106.64 | p0 = 0.559, p1 = 0.379 (p2 = 0.062), ω0 = 0.078, ω1 = 1, ω2 = 9.80 | 3, 5, 29, 49, 62, 63, 78 | 89.9 (P < 0.001) | |
M7 | -1157.11 | p = 0.145, q = 0.334 | not allowed | ||
M8 | -1106.97 | p0 = 0.938 (p1 = 0.062) p = 0.104, q = 0.117, ω = 10.11 | 3, 5, 29, 49, 62, 63, 78, 82 | 100.3 (P < 0.001) | |
Group 1 | M1a | -482.72 | p = 0.770 (p1 = 0.230), ω = 0.0, ω1 = 1 | not allowed | |
M2a | -465.93 | p0 = 0.884, p1 = 0.00 (p2 = 0.116), ω0 = 0.00, ω1 = 1, ω2 = 48.82 | 49, 63, 78, 82 | 33.6 (P < 0.001) | |
M7 | -482.79 | p = 0.005, q = 0.020 | not allowed | ||
M8 | -465.93 | p0 = 0.884 (p1 = 0.116) p = 0.005, q = 16.87, ω = 48.82 | 3, 49, 63, 78, 82 | 33.7 (P < 0.001) | |
Group 2 | M1a | -825.63 | p = 0.683 (p1 = 0.317), ω = 0.054, ω1 = 1 | not allowed | |
M2a | -793.03 | p0 = 0.491, p1 = 0.432 (p2 = 0.077), ω0 = 0.00, ω1 = 1, ω2 = 16.66 | 5, 29, 63, 78 | 65.2 (P < 0.001) | |
M7 | -828.09 | p = 0.096, q = 0.149 | not allowed | ||
M8 | -793.04 | p0 = 0.922 (p1 = 0.078) p = 0.023, q = 0.028, ω = 16.13 | 5, 29, 49, 62, 63, 78 | 70.1 (P < 0.001) |