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Table 8 Pairwise comparisons between FLU and HIVb, HIVw, JTT, LG models.

From: FLU, an amino acid substitution model for influenza proteins

   LogLK/site   #M1 > M2 #M2 > M1
M 1 M 2   M1 > M2 (p< .05) (p< .05)
FLU (-F) HIVb (-F) 0.14 696 484 49
FLU (-F) HIVw (-F) 0.19 843 689 46
FLU (-F) JTT (-F) 0.17 926 731 10
FLU (-F) LG (-F) 0.26 971 907 6
FLU (+F) HIVb (+F) 0.12 674 437 89
FLU (+F) HIVw (+F) 0.16 734 561 84
FLU (+F) JTT (+F) 0.13 958 755 3
FLU (+F) LG (+F) 0.23 988 954 0
  1. LogLK/site: the log likelihood difference between trees inferred using M1 and M2; a positive (negative) value means M1 is better (worse) than M2. #M1 > M2: the number of alignments among 992 alignments where M1 results in better likelihood value than M2. #M1 > M2 (p < 0.05): the number of alignments where the Kishino-Hasegawa test indicates that M1 is significantly better than M2. #M2 > M1 (p < 0.05): the same as #M1 > M2, but now M2 is significantly better than M1.