Skip to main content

Articles

Page 89 of 95

  1. Speciation often occurs in complex or uncertain temporal and spatial contexts. Processes such as reinforcement, allopatric divergence, and assortative mating can proceed at different rates and with different s...

    Authors: Paul ME Bunje, Marta Barluenga and Axel Meyer
    Citation: BMC Evolutionary Biology 2007 7:25
  2. The glucocorticoid receptor (GR) and mineralocorticoid receptor (MR) evolved from a common ancestor. Still not completely understood is how specificity for glucocorticoids (e.g. cortisol) and mineralocorticoid...

    Authors: Michael E Baker, Charlie Chandsawangbhuwana and Noah Ollikainen
    Citation: BMC Evolutionary Biology 2007 7:24
  3. Ependymin (Epd), the predominant protein in the cerebrospinal fluid of teleost fishes, was originally associated with neuroplasticity and regeneration. Ependymin-related proteins (Epdrs) have been identified i...

    Authors: Edna C Suárez-Castillo and José E García-Arrarás
    Citation: BMC Evolutionary Biology 2007 7:23
  4. Introduced species can have profound effects on native species, communities, and ecosystems, and have caused extinctions or declines in native species globally. We examined the evolutionary response of native ...

    Authors: Debra L Fisk, Leigh C Latta IV, Roland A Knapp and Michael E Pfrender
    Citation: BMC Evolutionary Biology 2007 7:22
  5. Introductions of non-native species can significantly alter the selective environment for populations of native species, which can respond through phenotypic plasticity or genetic adaptation. We examined pheno...

    Authors: Leigh C Latta IV, Jeremy W Bakelar, Roland A Knapp and Michael E Pfrender
    Citation: BMC Evolutionary Biology 2007 7:21
  6. How are morphological evolution and developmental changes related? This rather old and intriguing question had a substantial boost after the 70s within the framework of heterochrony (changes in rates or timing...

    Authors: Gabriel Marroig
    Citation: BMC Evolutionary Biology 2007 7:20
  7. In this paper we describe an analysis of the size evolution of both protein domains and their indels, as inferred by changing sizes of whole domains or individual unaligned regions or "spacers". We studied rel...

    Authors: Yuri Wolf, Thomas Madej, Vladimir Babenko, Benjamin Shoemaker and Anna R Panchenko
    Citation: BMC Evolutionary Biology 2007 7:19
  8. The effectiveness of elimination of slightly deleterious mutations depends mainly on drift and recombination frequency. Here we analyze the influence of these two factors on the strength of the purifying selec...

    Authors: Leila Mamirova, Konstantin Popadin and Mikhail S Gelfand
    Citation: BMC Evolutionary Biology 2007 7:17
  9. We report an analysis of a protein network of functionally linked proteins, identified from a phylogenetic statistical analysis of complete eukaryotic genomes. Phylogenetic methods identify pairs of proteins t...

    Authors: Mark Pagel, Andrew Meade and Daniel Scott
    Citation: BMC Evolutionary Biology 2007 7(Suppl 1):S16

    This article is part of a Supplement: Volume 7 Supplement 1

  10. Phylogenetic relationships between Lagomorpha, Rodentia and Primates and their allies (Euarchontoglires) have long been debated. While it is now generally agreed that Rodentia constitutes a monophyletic sister...

    Authors: David S Horner, Konstantinos Lefkimmiatis, Aurelio Reyes, Carmela Gissi, Cecilia Saccone and Graziano Pesole
    Citation: BMC Evolutionary Biology 2007 7:16
  11. Transcription factors regulate gene expression by interacting with their specific DNA binding sites. Some transcription factors, particularly those involved in transcription initiation, always bind close to tr...

    Authors: Brandon Smith, Hung Fang, Youlian Pan, P Roy Walker, A Fazel Famili and Marianna Sikorska
    Citation: BMC Evolutionary Biology 2007 7(Suppl 1):S15

    This article is part of a Supplement: Volume 7 Supplement 1

  12. Widespread transcription activities in the human genome were recently observed in high-resolution tiling array experiments, which revealed many novel transcripts that are outside of the boundaries of known pro...

    Authors: Zhaolei Zhang, Andy Wing Chun Pang and Mark Gerstein
    Citation: BMC Evolutionary Biology 2007 7(Suppl 1):S14

    This article is part of a Supplement: Volume 7 Supplement 1

  13. Within eukaryotes there is a complex cascade of RNA-based macromolecules that process other RNA molecules, especially mRNA, tRNA and rRNA. An example is RNase MRP processing ribosomal RNA (rRNA) in ribosome bi...

    Authors: Michael D Woodhams, Peter F Stadler, David Penny and Lesley J Collins
    Citation: BMC Evolutionary Biology 2007 7(Suppl 1):S13

    This article is part of a Supplement: Volume 7 Supplement 1

  14. Function prediction by transfer of annotation from the top database hit in a homology search has been shown to be prone to systematic error. Phylogenomic analysis reduces these errors by inferring protein func...

    Authors: Nandini Krishnamurthy, Duncan Brown and Kimmen Sjölander
    Citation: BMC Evolutionary Biology 2007 7(Suppl 1):S12

    This article is part of a Supplement: Volume 7 Supplement 1

  15. The diversity of visual systems in fish has long been of interest for evolutionary biologists and neurophysiologists, and has recently begun to attract the attention of molecular evolutionary geneticists. Seve...

    Authors: Cameron J Weadick and Belinda SW Chang
    Citation: BMC Evolutionary Biology 2007 7(Suppl 1):S11

    This article is part of a Supplement: Volume 7 Supplement 1

  16. Comparative genomics approaches, where orthologous DNA regions are compared and inter-species conserved regions are identified, have proven extremely powerful for identifying non-coding regulatory regions loca...

    Authors: Hui Chen and Mathieu Blanchette
    Citation: BMC Evolutionary Biology 2007 7(Suppl 1):S9

    This article is part of a Supplement: Volume 7 Supplement 1

  17. Bacterial genomes develop new mechanisms to tide them over the imposing conditions they encounter during the course of their evolution. Acquisition of new genes by lateral gene transfer may be one of the domin...

    Authors: Pradeep Reddy Marri, Weilong Hao and G Brian Golding
    Citation: BMC Evolutionary Biology 2007 7(Suppl 1):S8

    This article is part of a Supplement: Volume 7 Supplement 1

  18. A comprehensive evolutionary analysis of bacterial genomes implies to identify the hallmark of vertical and non-vertical signals and to discriminate them from the presence of mere phylogenetic noise. In this r...

    Authors: Iñaki Comas, Andrés Moya and Fernando González-Candelas
    Citation: BMC Evolutionary Biology 2007 7(Suppl 1):S7

    This article is part of a Supplement: Volume 7 Supplement 1

  19. Synonymous codon usage varies widely between genomes, and also between genes within genomes. Although there is now a large body of data on variations in codon usage, it is still not clear if the observed patte...

    Authors: Huai-Chun Wang and Donal A Hickey
    Citation: BMC Evolutionary Biology 2007 7(Suppl 1):S6

    This article is part of a Supplement: Volume 7 Supplement 1

  20. Models of codon evolution have proven useful for investigating the strength and direction of natural selection. In some cases, a priori biological knowledge has been used successfully to model heterogeneous evolu...

    Authors: Le Bao, Hong Gu, Katherine A Dunn and Joseph P Bielawski
    Citation: BMC Evolutionary Biology 2007 7(Suppl 1):S5

    This article is part of a Supplement: Volume 7 Supplement 1

  21. Thanks to the large amount of signal contained in genome-wide sequence alignments, phylogenomic analyses are converging towards highly supported trees. However, high statistical support does not imply that the...

    Authors: Nicolas Lartillot, Henner Brinkmann and Hervé Philippe
    Citation: BMC Evolutionary Biology 2007 7(Suppl 1):S4

    This article is part of a Supplement: Volume 7 Supplement 1

  22. Most studies inferring species phylogenies use sequences from single copy genes or sets of orthologs culled from gene families. For taxa such as plants, with very high levels of gene duplication in their nucle...

    Authors: Michael J Sanderson and Michelle M McMahon
    Citation: BMC Evolutionary Biology 2007 7(Suppl 1):S3

    This article is part of a Supplement: Volume 7 Supplement 1

  23. Phylogenetic analyses based on datasets rich in both genes and species (phylogenomics) are becoming a standard approach to resolve evolutionary questions. However, several difficulties are associated with the ...

    Authors: Béatrice Roure, Naiara Rodriguez-Ezpeleta and Hervé Philippe
    Citation: BMC Evolutionary Biology 2007 7(Suppl 1):S2

    This article is part of a Supplement: Volume 7 Supplement 1

  24. The First Phylogenomics Conference was held in Ste-Adèle (Québec, Canada) in March 2006. Selected papers appear in this special issue of BMC Evolutionary Biology. Here, we give an introduction to the field and pr...

    Authors: Hervé Philippe and Mathieu Blanchette
    Citation: BMC Evolutionary Biology 2007 7(Suppl 1):S1

    This article is part of a Supplement: Volume 7 Supplement 1

  25. One of the important insights of quasi-species theory is an error-threshold. The error-threshold is the error rate of replication above which the sudden onset of the population delocalization from the fittest ...

    Authors: Nobuto Takeuchi and Paulien Hogeweg
    Citation: BMC Evolutionary Biology 2007 7:15
  26. The origin of angiosperms has been under debate since the time of Darwin. While there has been much speculation in past decades about pre-Cretaceous angiosperms, including Archaefructus, these reports are controv...

    Authors: Xin Wang, Shuying Duan, Baoyin Geng, Jinzhong Cui and Yong Yang
    Citation: BMC Evolutionary Biology 2007 7:14
  27. The parasitic Platyhelminthes (Neodermata) contains three parasitic groups of flatworms, each having a unique morphology, and life style: Monogenea (primarily ectoparasitic), Trematoda (endoparasitic flukes), ...

    Authors: Joong-Ki Park, Kyu-Heon Kim, Seokha Kang, Won Kim, Keeseon S Eom and DTJ Littlewood
    Citation: BMC Evolutionary Biology 2007 7:11
  28. Fishes in the families Cichlidae and Labridae provide good probable examples of vertebrate adaptive radiations. Their spectacular trophic radiations have been widely assumed to be due to structural key innovat...

    Authors: Kohji Mabuchi, Masaki Miya, Yoichiro Azuma and Mutsumi Nishida
    Citation: BMC Evolutionary Biology 2007 7:10
  29. Changes in protein evolutionary rates among lineages have been frequently observed during periods of notable phenotypic evolution. It is also known that, following gene duplication and loss, the protein evolut...

    Authors: Yoshihiro Kawahara and Tadashi Imanishi
    Citation: BMC Evolutionary Biology 2007 7:9
  30. The tribe Lamprologini is the major substrate breeding lineage of Lake Tanganyika's cichlid species flock. Among several different life history strategies found in lamprologines, the adaptation to live and bre...

    Authors: Stephan Koblmüller, Nina Duftner, Kristina M Sefc, Mitsuto Aibara, Martina Stipacek, Michel Blanc, Bernd Egger and Christian Sturmbauer
    Citation: BMC Evolutionary Biology 2007 7:7
  31. Sirenia (manatees, dugongs and Stellar's sea cow) have no evolutionary relationship with other marine mammals, despite similarities in adaptations and body shape. Recent phylogenomic results place Sirenia in A...

    Authors: Margaret E Kellogg, Sandra Burkett, Thomas R Dennis, Gary Stone, Brian A Gray, Peter M McGuire, Roberto T Zori and Roscoe Stanyon
    Citation: BMC Evolutionary Biology 2007 7:6
  32. In acoustic species, traits such as male calling song are likely to diverge quickly between allopatric populations due to sexual selection, and divergence in parameters such as carrier frequency, chirp structu...

    Authors: Nathan W Bailey, Darryl T Gwynne, William V Bailey and Michael G Ritchie
    Citation: BMC Evolutionary Biology 2007 7:5
  33. Dispersal between habitat patches is a key process in the functioning of (meta)populations. As distance between suitable habitats increases, the ongoing process of habitat fragmentation is expected to generate...

    Authors: Nicolas Schtickzelle, Augustin Joiris, Hans Van Dyck and Michel Baguette
    Citation: BMC Evolutionary Biology 2007 7:4
  34. In animals, the biogenesis of some lipoprotein classes requires members of the ancient large lipid transfer protein (LLTP) superfamily, including the cytosolic large subunit of microsomal triglyceride transfer...

    Authors: Jean-Christophe Avarre, Esther Lubzens and Patrick J Babin
    Citation: BMC Evolutionary Biology 2007 7:3
  35. The dynamics of antagonistic host-parasite coevolution are believed to be crucially dependent on the rate of migration between populations. We addressed how the rate of simultaneous migration of host and paras...

    Authors: Andrew D Morgan, Michael A Brockhurst, Laura DC Lopez-Pascua, Csaba Pal and Angus Buckling
    Citation: BMC Evolutionary Biology 2007 7:1
  36. The compatible solute trehalose is a non-reducing disaccharide, which accumulates upon heat, cold or osmotic stress. It was commonly accepted that trehalose is only present in extremophiles or cryptobiotic org...

    Authors: Nelson Avonce, Alfredo Mendoza-Vargas, Enrique Morett and Gabriel Iturriaga
    Citation: BMC Evolutionary Biology 2006 6:109
  37. Comparative approaches using protostome and deuterostome data have greatly contributed to understanding gene function and organismal complexity. The family 2 G-protein coupled receptors (GPCRs) are one of the ...

    Authors: João CR Cardoso, Vanda C Pinto, Florbela A Vieira, Melody S Clark and Deborah M Power
    Citation: BMC Evolutionary Biology 2006 6:108
  38. The highly homologous PE_PGRS (Proline-glutamic acid_polymorphic GC-rich repetitive sequence) genes are members of the PE multigene family which is found only in mycobacteria. PE genes are particularly abundan...

    Authors: Anis Karboul, Nicolaas C Gey van Pittius, Amine Namouchi, Véronique Vincent, Christophe Sola, Nalin Rastogi, Philip Suffys, Michel Fabre, Angel Cataldi, Richard C Huard, Natalia Kurepina, Barry Kreiswirth, John L Ho, M Cristina Gutierrez and Helmi Mardassi
    Citation: BMC Evolutionary Biology 2006 6:107
  39. It is expected that genes that are expressed early in development and have a complex expression pattern are under strong purifying selection and thus evolve slowly. Hox genes fulfill these criteria and thus, shou...

    Authors: Sònia Casillas, Bárbara Negre, Antonio Barbadilla and Alfredo Ruiz
    Citation: BMC Evolutionary Biology 2006 6:106
  40. The least squares (LS) method for constructing confidence sets of trees is closely related to LS tree building methods, in which the goodness of fit of the distances measured on the tree (patristic distances) ...

    Authors: Aleksandra Czarna, Rafael Sanjuán, Fernando González-Candelas and Borys Wróbel
    Citation: BMC Evolutionary Biology 2006 6:105
  41. In order to study the dynamics of evolutionary change, 12 populations of E. coli B were serially propagated for 20,000 generations in minimal glucose medium at constant 37°C. Correlated changes in various other t...

    Authors: Sean C Sleight, Nicholas S Wigginton and Richard E Lenski
    Citation: BMC Evolutionary Biology 2006 6:104
  42. The Caenorhabditis elegans genome is known to code for at least 1149 G protein-coupled receptors (GPCRs), but the GPCR(s) critical to the regulation of reproduction in this nematode are not yet known. This study ...

    Authors: Sivan Vadakkadath Meethal, Miguel J Gallego, Ryan J Haasl, Stephen J Petras III, Jean-Yves Sgro and Craig S Atwood
    Citation: BMC Evolutionary Biology 2006 6:103
  43. Glycolysis and subsequent fermentation is the main energy source for many anaerobic organisms. The glycolytic pathway consists of ten enzymatic steps which appear to be universal amongst eukaryotes. However, i...

    Authors: Alexandra Stechmann, Manuela Baumgartner, Jeffrey D Silberman and Andrew J Roger
    Citation: BMC Evolutionary Biology 2006 6:101
  44. Reliable taxonomic identification at the species level is the basis for many biological disciplines. In order to distinguish species, it is necessary that taxonomic characters allow for the separation of indiv...

    Authors: Markus Pfenninger, Mathilde Cordellier and Bruno Streit
    Citation: BMC Evolutionary Biology 2006 6:100

Featured videos

View featured videos from across the BMC-series journals

Annual Journal Metrics

  • For BMC Evolutionary Biology (former title)

    2022 Citation Impact
    3.4 - 2-year Impact Factor
    3.6 - 5-year Impact Factor
    1.061 - SNIP (Source Normalized Impact per Paper)
    0.968 - SJR (SCImago Journal Rank)

    2023 Speed
    29 days submission to first editorial decision for all manuscripts (Median)
    193 days submission to accept (Median)

    2023 Usage 
    1,882,764 downloads
    3,013 Altmetric mentions

  • Transparency and Openness
    TOP Factor score - 9

    Peer Community In
    BMC Ecology and Evolution welcomes submissions of pre-print manuscripts recommended by the Peer Community In (PCI) platform. The journal may use PCI reviews and recommendations for the review process if appropriate. For instructions to submit your PCI recommended article, please click here. To find out more, please read our blog

Sign up for article alerts and news from this journal