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Table 1 Estimation of ω in ete-toolkit using a branch model and RELAX analysis results

From: Searching for signatures of positive selection in cytochrome b gene associated with subterranean lifestyle in fast-evolving arvicolines (Arvicolinae, Cricetidae, Rodentia)

 

branch model analysis

RELAX

Subterranean species

Fg, ω1

Bg, ω0

P_LRT b_free and M0

P_LRT b_free and b_neut

K

P

LRT

All species

0.0566

0.0303

2.45E-06

1.46E-125

N/A

N/A

N/A

Ellobius sp.

0.0642

0.0243

2.33E-06

4.76E-81

0.52

0

23.97

L. mandarinus

0.1325

0.0269

4.69E-05

0.00024

0

0.001

11.78

M. pinetorum

0.0233

0.0224

0.9327

4.62E-24

1.05

0.804

0.06

P. schaposchnikowi

0.0617

0.0356

0.0711

1.26E-09

0.63

0.023

5.15

T. subterraneus

0.0071

0.0343

0.05

2.48E-17

23.22

0.014

6.02

  1. Fg foreground branch (subterranean species), Bg background branch (surface-dwelling species). Subterranean species indicated by color on Fig. 3. P_LRT likelihood ratio test p-value for models comparison, M0 one-ratio model, b_fee free-branch model, b_neut neutral-branch model, K selection intensity parameter, P p-value, LRT likelihood ratio test, N/A not analyzed. Significant values indicated by bold