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Table 1 Estimates of evolutionary divergence between and within clades in the L. flavopunctatus group

From: Historical biogeography, systematics, and integrative taxonomy of the non-Ethiopian speckled pelage brush-furred rats (Lophuromys flavopunctatus group)

Clade

1

2

3

4

5

6

7

8

9

10

11

12

13

14

15

16

17

18

19

20

21

22

23

1 L. zena

0.9

31.6

40.4

33.3

31.2

41.7

41.2

46.6

38.6

49.3

40.9

32.4

46.0

48.3

43.8

47.3

58.3

60.8

49.0

64.0

64.9

64.4

73.9

2 L. stanleyi

2.9

1.4

36.6

30.0

29.8

40.5

41.6

48.6

34.7

44.4

35.4

32.9

43.2

45.1

46.3

46.5

54.2

60.9

48.3

66.7

65.2

66.7

70.1

3 L. laticeps

3.8

3.4

1.1

28.8

27.8

36.3

40.3

47.7

39.5

46.6

37.3

32.3

42.1

47.0

43.6

45.0

59.4

65.3

47.0

63.8

63.4

61.8

77.4

4 L. dudui

3.6

3.2

3.1

1.6

20.1

31.0

31.0

33.9

30.9

36.2

29.9

24.0

28.3

39.1

35.2

39.7

50.5

48.1

43.6

51.4

52.5

50.3

68.3

5 L. makundii

3.4

3.2

3.0

2.4

0.6

27.5

28.1

31.9

28.2

36.2

30.6

25.7

31.3

36.7

32.7

37.0

53.9

46.2

38.7

43.1

44.3

41.3

65.5

6 L. machangui

3.9

3.7

3.4

3.4

3.0

1.3

29.4

46.2

34.8

42.2

39.2

33.2

43.2

46.7

45.5

43.5

58.4

61.3

45.5

62.3

59.7

59.6

75.5

7 L. sabuni

3.8

3.8

3.8

3.3

3.0

2.7

0.6

44.9

36.9

39.2

38.0

32.7

41.7

45.1

40.1

42.7

59.8

63.3

47.7

63.6

60.2

60.4

76.5

8 L. rita

4.2

4.4

4.4

3.6

3.4

4.2

4.1

0.2

44.1

44.5

42.9

36.3

43.5

50.9

47.4

49.0

62.7

60.1

47.0

67.2

68.1

65.5

80.7

9 L. cf. cinereus

3.5

3.1

3.7

3.3

3.0

3.2

3.4

4.0

0.9

41.6

36.6

33.2

44.6

46.3

41.7

45.0

57.7

58.9

47.8

66.0

59.3

60.8

71.7

10 L. pseudosikapusi

5.7

5.1

5.4

4.5

4.5

4.8

4.5

5.0

4.7

0.3

37.7

34.5

40.1

42.8

44.0

44.8

53.7

54.7

46.4

57.7

52.3

49.2

76.6

11 L. melanonyx 2

4.6

3.9

4.2

3.7

3.8

4.4

4.2

4.7

4.1

4.8

0.7

17.2

21.4

35.9

36.5

42.8

50.8

50.3

45.0

52.4

47.8

47.7

69.1

12 L. menageshae

3.8

3.8

3.8

3.0

3.2

3.9

3.8

4.2

3.8

4.4

2.3

0.2

15.5

30.4

31.1

39.4

45.6

50.6

40.6

47.8

47.2

44.9

68.0

13 L. simensis 2

4.7

4.3

4.3

3.2

3.5

4.4

4.2

4.4

4.5

4.6

2.5

1.8

0.6

38.5

37.8

46.1

53.9

56.0

44.2

56.3

54.6

51.6

75.2

14 L. chercherensis

5.1

4.7

5.1

4.7

4.3

5.0

4.8

5.3

4.9

5.2

4.4

3.8

4.3

0.8

43.2

41.6

62.9

63.8

53.1

60.1

60.4

54.6

82.0

15 L. brunneus

4.8

5.1

4.8

4.3

3.9

5.0

4.4

5.2

4.5

5.4

4.6

4.0

4.3

5.1

0.7

40.2

53.0

50.8

39.5

46.5

46.5

47.3

67.5

16 L. flavopunctatus

5.4

5.3

5.2

5.0

4.6

4.9

4.9

5.5

5.1

5.7

5.5

5.1

5.3

5.1

5.0

1.3

52.6

55.8

47.4

51.4

48.6

48.7

70.6

17 L. brevicaudus

5.9

5.5

6.1

5.9

6.2

5.9

6.1

6.3

5.8

6.4

6.0

5.5

5.8

7.1

6.1

6.2

0.5

61.6

51.4

62.9

64.4

65.9

72.9

18 L. melanonyx 1

5.8

5.7

6.3

5.5

5.1

5.8

6.0

5.6

5.5

6.5

5.8

6.1

5.9

7.0

5.8

6.5

6.5

0.3

45.0

68.2

57.9

57.7

76.8

19 L. simensis 1

6.1

6.0

5.9

5.8

5.2

5.6

5.9

5.8

5.9

6.3

6.2

5.6

5.6

7.0

5.3

6.5

6.6

5.8

0.9

43.9

39.2

44.0

55.6

20 L. kilonzoi

5.9

6.1

6.0

5.6

4.6

5.8

5.9

6.1

6.0

6.6

5.9

5.6

5.7

6.4

5.1

5.8

6.4

6.5

5.4

1.0

51.7

52.6

78.5

21 L. verhageni

5.9

5.8

5.9

5.6

4.7

5.4

5.4

6.1

5.3

6.0

5.3

5.5

5.5

6.4

5.0

5.5

6.5

5.4

4.8

4.7

0.2

32.0

73.6

22 L. aquilus

5.9

6.0

5.7

5.4

4.4

5.4

5.5

5.9

5.5

5.6

5.3

5.2

5.2

5.7

5.1

5.5

6.6

5.4

5.5

4.8

2.8

0.4

77.0

23 L. chrysopus

8.4

7.9

8.9

8.5

8.1

8.6

8.7

9.1

8.1

9.7

8.8

8.8

8.8

10.0

8.3

8.9

8.7

9.0

7.5

9.0

8.3

8.7

2.0

  1. The number of base substitutions per site from averaging over all sequence pairs between groups are shown for within-clade (bold-font diagonal) and between-clade (upper matrix: actual average site differences, lower matrix: uncorrected p-distances) comparisons estimated in MEGA X [95]. The non-Ethiopian L. flavopunctatus members are highlighted in bold-font clade names