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Table 1 Identification of Nbp35-like proteins in selected representatives of eukaryotic lineages and prediction of their cellular localization

From: The iron-sulfur scaffold protein HCF101 unveils the complexity of organellar evolution in SAR, Haptista and Cryptista

Supergroup

Group/Species

Cytosol

Mitochondria

Chloroplast

Green

Red

Ophistokonta

Metazoa

 

Homo sapiens

Nbp35, Cfd1

Ind1

  
 

Drosophila melanogaster

Nbp35, Cfd1

Ind1

  
 

Fungi

 

Saccharomyces cerevisiae

Nbp35, Cfd1

   
 

Yarrowia lipolytica

Nbp35, Cfd1

Ind1

  

Amoebozoa

Lobosa

 

Acanthamoeba castelanii

Nbp35, Cfd1

Ind1

  
 

Conosa

    
 

Dictyostelium discoideum

Nbp35, Cfd1

Ind1

  
 

Mastigamoeba balamuthi

Nbp35, Cfd1

   
 

Entamoeba histolytica

Nbp35, Cfd1

   

Archaeplastida

Viridiplantae

 

Arabidopsis thaliana

Nbp35

Ind1

chHCF101

 
 

Chlorella variabilis

Nbp35

Ind1

chHCF101

 
 

Coccomyxa subellipsoidea

Nbp35, chHCF101

Ind1#

  
 

Micromonas pusilla

Nbp35

Ind1

chHCF101

 
 

Oryza sativa

Nbp35

Ind1

chHCF101

 
 

Ostreococcus tauri

Nbp35, chHCF101

Ind1

  
 

Physcomitrella patens

Nbp35

Ind1

chHCF101

 
 

Pyramimonas parkeae

Nbp35

Ind1*

chHCF101

 
 

Selaginella moellendorffii

Nbp35

Ind1#

chHCF101#

 
 

Glaucophyta

 

Glaucocystis sp.

Nbp35

Ind1

 

chHCF101*

 

Gloeochaete wittrockiana

Nbp35*, Cfd1*

Ind1*

 

chHCF101

 

Rhodophyta

 

Chondrus crispus

Nbp35

na

 

chHCF101

 

Cyanidioschyzon merolae

Nbp35

Ind1

 

chHCF101

 

Erythrolobus madagascarensis

Nbp35*

Ind1*

 

chHCF101*

 

Galdieria sulphuraria

Nbp35

Ind1

 

chHCF101

 

Madagascaria erythrocladiodes

Nbp35*

na

 

chHCF101

 

Porphyridium aerugineum

Nbp35

Ind1

 

chHCF101*

 

Rhodosorus marinus

Nbp35*

Ind1*

 

chHCF101*

 

Timspurckia oligopyrenoides

na

Ind1

 

chHCF101*

SARCH

 Alveolata

Apicomplexa

 

Babesia bovis

mHCF101*

Nbp35#

  
 

Cryptosporidium muris

mHCF101

Nbp35#

  
 

Toxoplasma gondii

mHCF101

Nbp35

  
 

Plasmodium falciparum

mHCF101

Nbp35#

  
 

Plasmodium yoelii

mHCF101

Nbp35#

  
 

Chromerida

 

Chromera vellia

mHCF101

Nbp35#

 

chHCF101

 

Vitrella brassica

mHCF101

Nbp35#

 

chHCF101

 

Perkinsus marinus

Nbp35#

mHCF101#

  
 

Dinoflagellata

 

Alexandrium monilatum

Nbp35*

mHCF101*

chHCF101*

 
 

Alexandrium tamarense

Nbp35*

mHCF101

chHCF101

 
 

Durinskia baltica

Nbp35

na

 

chHCF101*

 

Dinophysis acuminata

Nbp35*

mHCF101*

 

chHCF101*

 

Karenia brevis

Nbp35*

mHCF101

 

chHCF101

 

Oxyrrhis marina

Nbp35*

mHCF101*

 

na

 

Symbiodinium sp.

Nbp35#

mHCF101*

chHCF101

 
 

Cilliata

 

Tetrahymena thermophila

Nbp35

mHCF101

  
 

Oxytricha trifallax

Nbp35

mHCF101

  
 

Paramecium tetraurelia

Nbp35

mHCF101

  
 

Stylonychia sp.

Nbp35

mHCF101

  

 Rhizaria

Rhizaria

 

Ammonia sp.

Nbp35

mHCF101*

  
 

Elphidium margaritaceum

Nbp35

mHCF101*

  
 

Reticulomyxa filosa

Nbp35

mHCF101

  
 

Paulinella chromatophora

na

na

Bacterial HCF101-like

 
 

Chlorarachniophyta

 
 

Bigelowiella longifila

Nbp35

mHCF101*

 

chHCF101*

 

Bigelowiella natans

Nbp35*

mHCF101*

 

chHCF101

 

Lotharella globosa

Nbp35*

mHCF101*

 

chHCF101*

 Stramenopila

Oomycota

 

Albugo candidagi

Nbp35

mHCF101#

  
 

Albugo laibachii

Nbp35

mHCF101#

  
 

Aphanomyces astaci

Nbp35

mHCF101

  
 

Aphanomyces invadans

Nbp35

mHCF101

  
 

Phytophthora infestans

Nbp35

mHCF101*

  
 

Phytophthora parasitica

Nbp35

mHCF101

  
 

Saprolegnia diclina

Nbp35

mHCF101

  
 

Ochrophyta

 

Aureococcus anophagefferens

Nbp35

mHCF101*

 

chHCF101*

 

Ectocarpus siliculosus

Nbp35#

mHCF101

 

chHCF101

 

Phaeodactylum tricornutum

Nbp35

mHCF101

 

chHCF101

 

Nannochloropsis gaditana

Nbp35

mHCF101

 

chHCF101

 

Schizochytrium aggregatum

Nbp35

mHCF101

 

na

 

Thalassiosira oceanica

Nbp35

mHCF101*

 

chHCF101

 

Thalassiosira pseudonana

Nbp35

mHCF101

 

chHCF101

 

Blastocystis hominis

Nbp35

mHCF101

  

 Haptista

Haptophyta

 

Chrysochromulina polylepis

Nbp35*

mHCF101*

 

chHCF101*

 

Emiliania huxleyi

Nbp35

mHCF101

 

chHCF101

 

Exanthemachrysis gayraliae

na

mHCF101*

 

chHCF101*

 

Gephyrocapsa oceanica

Nbp35

mHCF101*

 

chHCF101

 

Isochrysis galbana

Nbp35

mHCF101

 

chHCF101*

 

Pleurochrysis carterae

Nbp35

mHCF101

 

chHCF101*

 

Prymnesium parvum

Nbp35*

mHCF101*

 

chHCF101*

 

Centrohelida

 

Raineriophrys erinaceoides

Nbp35*

mHCF101*

  

 Cryptista

Cryptophyta

 

Chroomonas mesostigmatica

Nbp35*, Cfd1*

mHCF101*

 

chHCF101*

 

Cryptomonas curvata

na

mHCF101

 

na

 

Cryptomonas paramecium

Nbp35*, Cfd1*

mHCF101

 

na

 

Geminigera cryophila

Nbp35*, Cfd1

mHCF101

 

chHCF101*

 

Guillardia theta

Nbp35/Cfd1

mHCF101*

 

chHCF101#

 

Hanusia phi

Nbp35*, Cfd1*

mHCF101

 

na

 

Hemiselmis rufescens

Nbp35, Cfd1*

mHCF101*

 

chHCF101#

 

Proteomonas sulcata

Nbp35*, Cfd1

mHCF101*

 

na

 

Rhodomonas sp.

Nbp35, Cfd1*

na

 

chHCF101*

 

Katablepharida

 

Roombia truncata

Nbp35*, Cfd1*

mHCF101*

  
 

Goniomonas

 

Goniomonas avonlea

Nbp35*, Cfd1*

mHCF101

  
 

Goniomonas pacifica

Nbp35, Cfd1*

mHCF101*

  

 Excavata

Euglenozoa

 

Euglena gracilis

Nbp35, na

na

chHCF101*

 
 

Eutreptiella gymnastica

Nbp35, Cfd1

Ind1

chHCF101

 
 

Trypanosoma brucei

Nbp35, Cfd1

Ind1

  
 

Leishmania major

Nbp35, Cfd1

Ind1

  
 

Metamonada

 

Trichomonas vaginalis

Nbp35, Cfd1

Ind1

  
 

Giardia intestinalis

Nbp35

Nbp35

  
 

Heterolobosea

 

Naegleria gruberi

Nbp35, Cfd1

Ind1

  
  1. Proteins with experimentally verified localization are in bold. Underlined taxons indicate available genome sequence, transcriptomes were available for other taxons
  2. *Incomplete sequence of the gene, cellular localization is predicted based on the phylogenetic analysis (Fig. 5)
  3. #Prediction with low confidence; na, gene was not identified in available transcriptome