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Table 4 Summary statistics of putative cis-elements present in the 2 kb upstream promoter region of FTs across nine species

From: Genome-wide characterization of PEBP family genes in nine Rosaceae tree species and their expression analysis in P. mume

TF Family

Organism

Motif

Description

A. thaliana

Populus trichocarpa

M. domestica

Pyrus communis

R. occidentalis

P. armeniaca

P. avium

P. mume

P. persica

AtFT

PtFT1

PtFT2

MdFT

PcFT1

RoFT1

RoFT2

PaFT

PvFT

PmFT

PpFT

CCACA box

A. thaliana

CCACA

Binding site for CO

5

4

0

6

5

3

10

6

6

6

6

CArG box

A. thaliana

CC[A/T]6GG

Binding site for MADS-domain transcription factor

10

1

3

2

2

1

2

2

4

3

5

MYB

A. thaliana

CAACAG

Binding site for MYB transcription factor

5

3

1

2

3

4

5

3

3

3

2

bHLH

A. thaliana

ATGTG/AGGTG

Binding site for MYC

7

3

3

5

16

8

6

7

6

6

4

TCT-motif

A. thaliana

TCTTAC

Part of a light-responsive element

2

2

0

2

1

2

0

4

3

3

3

GATA-motif

A. thaliana

AAGATAAGATT

Part of a light-responsive element

0

1

0

1

1

2

2

0

0

0

0

AE-box

A. thaliana

AGAAACAA

Part of a module for light response

2

0

1

1

0

0

0

0

0

0

1

G-box

A. thaliana

TACGTG

Cis-acting regulatory element involved in light responsiveness

2

1

1

1

2

2

2

3

1

3

2

GT1-motif

A. thaliana

GGTTAA

Light-responsive element

2

1

2

0

0

0

2

3

2

3

3

MSA-like

 

(T/C)C(T/C)AACGG(T/C)(T/C)A

Cis-regulatory element involved in cell cycle regulation

0

0

0

2

0

0

0

0

0

0

0

GARE-motif

Brassica oleracea

TCTGTTG

Gibberellin-responsive element

0

0

0

1

1

1

0

0

1

0

0

P-box

Oryza sativa

CCTTTTG

Gibberellin-responsive element

1

0

1

0

0

0

0

1

1

1

1

AP2; ERF

A. thaliana

CCGAC

Ethylene-responsive transcription factor

7

3

5

8

6

8

6

2

4

2

4

ABRE

A. thaliana

ACGTG

Cis-acting element involved in the abscisic acid responsiveness

1

3

2

1

4

4

5

2

1

2

1

LTR

Hordeum vulgare

CCGAAA

Cis-acting element involved in low-temperature responsiveness

1

0

0

0

1

1

0

0

1

1

0

W box

A. thaliana

CCGAAA

Binding site for WRKY transcription factor

0

0

2

0

0

1

1

1

1

1

1

  1. The organism column indicates in which organism the motif was characterized