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Table 2 Gene count data used for likelihood scenario testing

From: Gene count from target sequence capture places three whole genome duplication events in Hibiscus L. (Malvaceae)

 

Number of copies

Gene name

G

S

C

M

T

P

ABC-c2

1

2

1

1

0

0

ABC-c2

1

1

1

0

1

3

ACCS

1

0

2

1

0

2

ACCS

1

3

2

2

2

1

Acylamino

1

3

3

2

2

5

AglucanP

1

9

2

2

2

12

Ankyrin

3

6

2

2

2

4

Ankyrin

1

1

2

0

0

0

Bgalactosidase8

1

3

2

2

6

4

CAD

4

2

3

2

2

3

CAD

1

1

1

1

1

1

Calcium11

1

4

2

2

0

3

Calcium11

2

5

2

3

6

2

Calcium-atpase1

1

3

1

1

1

2

Calcium-atpase1

1

0

1

1

1

2

CesA1

3

4

2

2

2

4

EIF-2B

2

2

1

1

1

2

EIF-2B

1

2

1

1

1

2

F5H

1

1

1

1

1

2

F5H

1

4

2

2

2

4

F5H

1

0

2

2

1

2

Formin2

1

5

1

1

0

0

Formin2

1

3

2

2

2

2

Formin2

4

7

2

3

2

2

Glutamine

1

5

3

3

2

1

GPDH

1

2

1

0

0

2

GPDH

1

1

2

1

1

1

GPDH

1

2

2

2

2

3

GPDH

1

6

2

2

2

2

GPDH

2

10

1

2

2

4

Kinesin-KP1

1

2

1

1

1

2

Kinesin-KP1

3

2

1

1

1

2

LOC105792102

2

2

1

1

1

2

LOC105792102

1

3

2

2

2

2

LOC105792102

1

2

2

2

2

4

LOC105792102

1

7

2

2

1

0

LOC105792102

1

1

1

1

1

3

MAP3K

1

4

1

1

1

2

MAP3K

1

3

2

2

2

4

Phospolipase

1

1

1

1

0

0

Phospolipase

1

4

2

2

0

0

Phospolipase

1

2

2

0

0

0

Plasma-ATPase

1

2

1

1

0

0

Plasma-ATPase

1

7

2

3

2

0

  1. Duplicated gene name represents separate paralogous clades. The number of copies were counted for each gene as the number of sequences from one individual in a clade that had Gossypium (G) as an outgroup. The abbreviations are short for Hibiscus syriacus (S), H. cannabinus (C), H. mechowii (W), H. trionum (T) and Pavonia triloba (P)