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Table 2 Primer pairs used to amplify the ancient mtDNA control-region sequence

From: Ancient mitochondrial DNA connects house mice in the British Isles to trade across Europe over three millennia

Fragment name

Primer name

Primer sequences (5′-3′)

Size (bp)

Reference

Fragment 1

Mm-1F

GCACCCAAAGCTGGTATTCT

146

[25]

 

Mm-1R

TTTTATGACCTGAACCATTGATT

 

Modified from [25]

Fragment 2

Mm-2F

CCAAGCATATAAGCAAGTACAT

141

[25]

 

Mm-2R

GTATGTCAGATAACACAGATAT

 

Modified from [25]

Fragment 2a

Mm-2aF

CAATATATATACCATGAATATTATCTTAA

121

This study

 

Mm-2aR

AAGGGGATAGTCATATGG

 

This study

Fragment 2b

Mm-2bF

ATCTGTGTTATCTGACATACACC

150

This study

 

Mm-2bR

TTTAATGGGCCCGGAGCGAGAA

 

This study

Fragment 2c

Mm-2cF

ACTATCCCCTTCCCCATTTGG

143

This study

 

Mm-2cR

GTAAGAACCAGATGTCTGATAA

 

This study

Fragment 3

Mm-3F

TCTACCATCCTCCGTGAAA

145

Modified from [25]

 

Mm-3R

TATGGGCGATAACGCATTTGAT

 

[25]

Fragment 4

Mm-4F

CTTTATCAGACATCTGGTTCTT

124

[25]

 

Mm-4R

CACAGTTATGTTGGTCATGG

 

This study

Fragment 4b

Mm-4bF

CTTAAATAAGACATCTCGATGG

142

This study

 

Mm-4bR

TAGACTGTGTGCTGTCCTT

 

This study

Fragment 5

Mm-5F

CTTTCATCAACATAGCCGTCAA

129

[25]

 

Mm-5R

CATTTATGTCTAACAAGCATGAA

 

This study

Fragment 6

Mm-6F

CACCTACGGTGAAGAATCATT

146

[25]

 

Mm-6R

TGTTTTTGGGGTTTGGCATTAA

 

[25]

Fragment 7

Mm-7F

CTCAATACCAAATTTTAACTCTC

144

[25]

 

Mm-7R

GTCATATTTTGGGAACTACTAG

 

[25]

Fragment 8

Mm-8F

CTATCAAACCCTATGTCCTGA

140

[25]

 

Mm-8R

CTTGTTAATGTTTATTGCGTAA

 

Modified from [25]