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Table 2 Distribution of detected positively selected sites

From: Directional divergence of Ep300 duplicates in teleosts and its implications

Clade

Positively selected sites

Mammal

(), ()zf-TAZ, (549E), ()KIX, (668E, 817E, 898F, 1015M, 1078M), ()Bromo_cbp_like, (1221E), ()RING_CBP-p300, (1323E)PHD_p300, (1346E), (1369E, 1510E)HAT_KAT11, (), ()ZZ_CBP, (), ()ZnF_TAZ, (), (2174E)Creb_binding, (2280E, 2328E)

Rodentia

(267FM, 318E), ()zf-TAZ, (486E, 545E, 549E, 550E), ()KIX, (851E, 875E, 1015M, 1053M), ()Bromo_cbp_like, (), ()RING_CBP-p300, ()PHD_p300, (1342E, 1344E, 1346E), ()HAT_KAT11, (), ()ZZ_CBP, (), ()ZnF_TAZ, (), (2086E)Creb_binding, ()

Sauropsid

(), ()zf-TAZ, (), ()KIX, (817E, 1044M, 1079E), ()Bromo_cbp_like, (), ()RING_CBP-p300, ()PHD_p300, (), ()HAT_KAT11, (1704E), (1740E)ZZ_CBP, (), ()ZnF_TAZ, (2083E), ()Creb_binding, (2187E, 2189E)

Teleost (Ep300a)

(11E, 12E, 15E, 66E, 155E, 173E, 236E, 256E, 268E, 315E), ()zf-TAZ, (500E), ()KIX, (797E, 925E, 1089M), ()Bromo_cbp_like, (), (1293E)RING_CBP-p300, ()PHD_p300, (), (1463E)HAT_KAT11, (), ()ZZ_CBP, (), ()ZnF_TAZ, (1981E, 2031E), ()Creb_binding, ()

Teleost (Ep300b)

(2E, 4E, 12E, 42E, 125E, 267E, 275E, 330E), (397E)zf-TAZ, (485E, 498E, 505E), ()KIX, (735E, 832M, 880E, 910M, 911M), (1135E)Bromo_cbp_like, (), ()RING_CBP-p300, (1329E)PHD_p300, (), ()HAT_KAT11, (), ()ZZ_CBP, (), ()ZnF_TAZ, (), (2109E, 2152E)Creb_binding, (2327E)

Neoteleostei (Ep300a)

(66E, 155E, 165E), ()zf-TAZ, (500E, 575E), (581E)KIX, (715E, 765E, 768E, 812E, 850E, 1011E), ()Bromo_cbp_like, (), ()RING_CBP-p300, ()PHD_p300, (), (1463E)HAT_KAT11, (), ()ZZ_CBP, (), ()ZnF_TAZ, (1968E), ()Creb_binding, (2188E, 2242E)

Neoteleostei (Ep300b)

(2E, 4E, 28E, 37E, 42E, 271E, 303E, 313E), (360E, 397E)zf-TAZ, (485E, 487E, 498E, 535E), ()KIX, (721E, 759E, 926E, 932E, 1009E, 1085E), ()Bromo_cbp_like, (), ()RING_CBP-p300, (1329E)PHD_p300, (), ()HAT_KAT11, (), ()ZZ_CBP, (), ()ZnF_TAZ, (), (2109E, 2152E)Creb_binding, (2342E, 2444E, 2502E)

Atherinomorphae (Ep300a)

(51EF, 69E), ()zf-TAZ, (537E), (581E)KIX, (715E, 719E, 750E, 887M, 1089M), ()Bromo_cbp_like, (), ()RING_CBP-p300, (1303F)PHD_p300, (), ()HAT_KAT11, (), ()ZZ_CBP, (), ()ZnF_TAZ, (1971E), ()Creb_binding, (2480E)

Atherinomorphae (Ep300b)

(2E, 12E, 37E, 115E, 123M, 127M, 136E, 138E, 186E, 197E, 233E, 269E, 276E, 280E, 292M, 303E, 305E, 336E, 337E), (389E)zf-TAZ, (473E, 487E), ()KIX, (727E, 735E, 803E, 868E, 935E, 959E, 972E, 992E, 1009E, 1015E, 1034E, 1097E), ()Bromo_cbp_like, (), ()RING_CBP-p300, (1329E)PHD_p300, (), ()HAT_KAT11, (), ()ZZ_CBP, (), ()ZnF_TAZ, (), (2097M)Creb_binding, (2271E, 2323E)

Cichliformes (Ep300a)

(214E), ()zf-TAZ, (), (594EFM)KIX, (723M, 763EF, 765E, 766EM, 778EM, 781E, 788EF), ()Bromo_cbp_like, (), ()RING_CBP-p300, ()PHD_p300, (), ()HAT_KAT11, (), ()ZZ_CBP, (), ()ZnF_TAZ, (), ()Creb_binding, ()

Cichliformes (Ep300b)

(), ()zf-TAZ, (), ()KIX, (904M, 910M, 911F), ()Bromo_cbp_like, (), ()RING_CBP-p300, ()PHD_p300, (), ()HAT_KAT11, (), ()ZZ_CBP, (), ()ZnF_TAZ, (), ()Creb_binding, ()

Ostariophysi (Ep300a)

(11E, 12E, 14E, 15E, 66E, 155E, 259E, 262E, 266E, 277E, 282E, 283E, 331E), ()zf-TAZ, (576E), ()KIX, (676M, 727E, 753E, 762E, 802E, 805FM, 841M, 842E, 849E, 861E, 867M, 880E, 884E, 929E, 932E, 982E, 1002E, 1007E, 1015E, 1068E, 1090M, 1094M), ()Bromo_cbp_like, (1223M), (1293E)RING_CBP-p300, (1323E)PHD_p300, (), (1467M, 1529E, 1569E)HAT_KAT11, (), ()ZZ_CBP, (1773E), (1810E, 1812E)ZnF_TAZ, (1892E, 1900E, 2038E, 2059E), (2098E, 2121FM, 2127E, 2129E)Creb_binding, (2331E, 2409E, 2423E, 2446E)

Ostariophysi (Ep300b)

(125FM, 179E, 267E), (400E)zf-TAZ, (), ()KIX, (708E, 735E, 740E, 822M, 1099E), (1135E)Bromo_cbp_like, (), ()RING_CBP-p300, ()PHD_p300, (1339E), ()HAT_KAT11, (1671E), (1754E)ZZ_CBP, (), ()ZnF_TAZ, (1982E), (2106E, 2119E)Creb_binding, (2498E)

Cypriniformes (Ep300a)

(9E, 12E, 15E, 66E, 155M, 262E, 266E, 268E, 277E, 282E), ()zf-TAZ, (), ()KIX, (676FM, 689E, 762E, 802E, 805M, 841E, 849EM, 852E, 880E, 885E, 887FM, 929E, 936FM, 1002E, 1007EF, 1064E, 1068EF, 1090M), ()Bromo_cbp_like, (), ()RING_CBP-p300, ()PHD_p300, (), (1463M)HAT_KAT11, (), ()ZZ_CBP, (1773E), (1810E, 1812EFM, 1813E)ZnF_TAZ, (), (2098E)Creb_binding, (2196EF, 2409E, 2423E)

Cypriniformes (Ep300b)

(125FM, 267E), ()zf-TAZ, (), ()KIX, (740E, 822FM), ()Bromo_cbp_like, (), ()RING_CBP-p300, ()PHD_p300, (), ()HAT_KAT11, (1671EF), (1754FM)ZZ_CBP, (), ()ZnF_TAZ, (), ()Creb_binding, (2215E, 2470E)

  1. A pair of parentheses without a following name indicates that they contain positively selected sites outside conserved domains; whereas a pair of parentheses with a following name (like zf-TAZ) indicates that they contain positively selected sites located inside a conserved domain. The numbers in parentheses indicate the position of positively selected sites; the superscripts (E, F and M) of a number indicate which method reported this position, with E to represent MEME, F to represent FUBAR and M to represent M8&M7 models