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Table 1 Results of CmC and RELAX analyses

From: Directional divergence of Ep300 duplicates in teleosts and its implications

Clade

CmC

RELAX

branch labela

ω0

ω1

ω2

pb

branch label

mean ω

kc

p

Mammal

#1

0.01304 (70.9%)

1 (1.1%)

0.24285 (28.0%)

 

Test

0.0794

  

Sauropsid

#2

0.01304 (70.9%)

1 (1.1%)

0.16454 (28.0%)

5.72e-14

Reference

0.0553

0.78

3.31e-14

Teleost (Ep300a)

#1

0.02232 (56.6%)

1 (2.9%)

0.22425 (40.5%)

 

Test

0.1122

  

Teleost (Ep300b)

#2

0.02232 (56.6%)

1 (2.9%)

0.23696 (40.5%)

0.04754

Reference

0.1230

1.08

0.00124

Neoteleostei (Ep300a)

#1

0.02234 (56.4%)

1 (3.0%)

0.16996 (40.5%)

 

Test

0.0899

  

Neoteleostei (Ep300b)

#2

0.02234 (56.4%)

1 (3.0%)

0.24039 (40.5%)

1.64e-33

Reference

0.1280

1.14

1.25e-12

Atherinomorphae (Ep300a)

#1

0.02225 (56.5%)

1 (2.9%)

0.16380 (40.6%)

 

Test

0.0907

  

Atherinomorphae (Ep300b)

#2

0.02225 (56.5%)

1 (2.9%)

0.26161 (40.6%)

1.28e-14

Reference

0.1569

1.06

0.31731

Cichliformes (Ep300a)

#1

0.02222 (56.5%)

1 (2.9%)

0.26189 (40.6%)

 

Test

0.1513

  

Cichliformes (Ep300b)

#2

0.02222 (56.5%)

1 (2.9%)

0.24542 (40.6%)

0.13992

Reference

0.1335

1.20

0.01602

Ostariophysi (Ep300a)

#1

0.02208 (56.4%)

1 (3.0%)

0.31933 (40.6%)

 

Test

0.1553

  

Ostariophysi (Ep300b)

#2

0.02208 (56.4%)

1 (3.0%)

0.25481 (40.6%)

6.52e-20

Reference

0.1228

0.95

5.10e-06

Cypriniformes (Ep300a)

#1

0.02173 (56.1%)

1 (3.0%)

0.41002 (40.9%)

 

Test

0.2036

  

Cypriniformes (Ep300b)

#2

0.02173 (56.1%)

1 (3.0%)

0.24213 (40.9%)

1.72e-27

Reference

0.1204

4.41

2.25e-11

  1. aThe labels “#1” and “#2” here have nothing to do with the same labels in Fig. 2
  2. bThe p value here is an indication of whether the CmC model is significantly better than the M2a_rel model
  3. cA k > 1 combined with a p < 0.05 indicates that the selection strength has been intensified in the test branches relative to the reference; a k < 1 combined with a p < 0.05 indicates that the selection strength has been relaxed in the test branches relative to the reference