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Table 4 The genomic location, length and taxonomic distributions of 13 inversions. uc: direction uncertain; Cc: C. chinensis; Cf: C. floridus; Chn: Ch.nitens; Chp: Ch. praecox; Ia: I. australiense; Lt: Liriodendron tulipifera; Mk: Magnolia kwangsiensis

From: Evolutionary directions of single nucleotide substitutions and structural mutations in the chloroplast genomes of the family Calycanthaceae

 

Location

Length

Inversions

Taxonomic rank

loop

stem

Mk

Lt

Ia

Cf

Cc

Chn

Chp

IR

trnNGUU-trnRACG1

2

14

no

no

no

yes

yes

no

no

Genus

IR

trnNGUU-trnRACG2

92

17

no

no

no

no

yes

yes

no

Species

LSC

atpF-atpH

5

6

uc

uc

no

yes

yes

yes

yes

Subfamily

LSC

petA-psbJ

16

36

no

no

yes

no

no

no

no

Subfamily

LSC

psbC-trnSUGA

7

11

no

no

yes

yes

no

no

yes

Species

LSC

rps18-rpl20

16

17

no

no

no

yes

yes

yes

yes

Subfamily

LSC

rps2-rpoC2

10

9

no

no

yes

no

no

no

no

Subfamily

LSC

rps4-trnT

2

7

no

no

no

yes

yes

yes

yes

Subfamily

LSC

trnS-trnG

3

12

no

no

no

yes

yes

yes

yes

Subfamily

LSC

trnTGGU-psbD

4

7

no

no

yes

yes

yes

no

no

Genus

SSC

ndhA intron

8

11

no

yes

yes

no

no

no

no

Subfamily

SSC

ndhG

4

9

uc

uc

no

yes

no

no

no

Species

SSC

rpl32-trnL

2

8

no

uc

no

yes

yes

no

yes

Subfamily, Species