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Table 4 List of yeast genes that were found to adapt to novel environments, and were additionally shown to evolve these adaptations convergently across populations or species of yeast. Node hierarchy categories after discriminant function analysis (DFA) are shown in the first column. P - peripheral nodes, I - intermediate nodes

From: Aligning functional network constraint to evolutionary outcomes

DFA estimated Node hierarchy

Gene symbol

ORF ID

Reference

I

STE11

YLR362W

Lang et al., 2013 [49]

I

STE12

YHR084W

Lang et al., 2013 [49]

I

STE4

YOR212W

Lang et al., 2013 [49]

P

KRE6

YPR159W

Lang et al., 2013 [49]

I

SFL1

YOR140W

Lang et al., 2013 [49]

I

STE5

YDR103W

Lang et al., 2013 [49]

P

ANP1

YEL036C

Lang et al., 2013 [49]

I

GCN1

YGL195W

Lang et al., 2013 [49]

I

ERG5

YMR015C

Gerstein et al., 2012 [50]

P

ERG7

YHR072W

Gerstein et al., 2012 [50]

I

CNE1

YAL058W

Lang et al., 2013 [49]

I

GPB1

YOR371C

Lang et al., 2013 [49]

P

KEG1

YFR042W

Lang et al., 2013 [49]

I

KRE5

YOR336W

Lang et al., 2013 [49]

I

TOH1

YJL171C

Lang et al., 2013 [49]

P

SUL4

YBR294W

Gresham et al. 2008 [51]

I

GAL3

YDR009W

Hittinger et al., 2004 [52] Stern, 2013 [38]

I

GIN4

YDR507C

Gresham et al. 2008 [51]

I

PDR1

YGL013C

Anderson et al. 2003 [53]

I

SGF73

YGL066W

Gresham et al. 2008 [51]

I

SET4

YJL105W

Lang et al., 2013 [49]

I

SIR1

YKR101W

Gresham et al. 2008 [51]

I

ACE2

YLR131C

Lang et al., 2013 [49]

I

GAS1

YMR307W

Lang et al., 2013 [49]

I

WHI2

YOR043W

Lang et al., 2013 [49]

I

CKA2

YOR061W

Gresham et al. 2008 [51]