Table 2 Sequences summary for the different datasets including best-fitting nucleotide substitution models
From: Mind the gap! The mitochondrial control region and its power as a phylogenetic marker in echinoids
| Â | CRA-all | Mito-COI | Mito-16S | Mito-CRA |
|---|---|---|---|---|
Number of unique sequences | 86 | 33 | 33 | 33 |
MSA length (bp) | 405 | 562 | 558 | 405 |
%G | 20.4 | 18.9 | 22.3 | 20.9 |
%A | 30.9 | 26.0 | 31.0 | 30.7 |
%C | 21.4 | 24.4 | 20.5 | 21.0 |
%T | 27.3 | 30.8 | 26.2 | 27.5 |
Pinv | 0.09384 | 0.34741 (codon position 1&2) 0.04714 (codon position 3) | 0.36998 | 0.17559 |
Overall mean K2P/p-distance | 0.16/0.14 | 0.21/0.18 | 0.16/0.143 | 0.16/0.14 |
Best-fit model – (ML) | GTR + G | GTR + I + G | GTR + G | GTR + G |
Best-fit model – (BI) | HKY + G | SYM + I + G | GTR + G | HKY + G |