Table 1 Collection locality, museum location of voucher specimen, museum catalog number, SRA project number, number of Illumina reads, number of Trinity contigs and number of HaMSTr ortholog groups represented for each of the thirty-seven transcriptomes generated in this study
Taxon | Locality | Museum | # Contigs | # HaMStR Orthologs |
|---|---|---|---|---|
Acanthodrilidae sp. | Argentina, Tierra del Fuego, Ushuaia (coll. E. Lapied) | NCSM 27264 | 181,228 | 1140 |
Alma sp. Almidae | Gabon, edge of Lac Vembo, Gamba complex, (coll. S James 18 May 2008) | NCSM 27265 | 110,015 | 558 |
Avelona ligra Lumbricidae | France, Jargeau, Loiret Department, (coll. M. Koken) | MNHN HEL593 | 182,509 | 1173 |
Criodrilus lacuum Criodrilidae | Hungary (coll. C. Csuzdi) | NCSM 27266 | 119,084 | 934 |
Dendrobaena hortensis Lumbricidae | Sweden, Södermanland, Vingåker, Valltrand, indoor compost, 59.0864 N, 16.0544 E (coll. E. Boräng, 1 Jan 2012) | SMNH 161291 in EtOH CE13942 | 179,981 | 1180 |
Dichogaster sp. (green tree worm) Benhamiidae | Brazil, Amazonas, near Manaus, Reserva Campina (coll. S. James, S. Coral, 2 Feb 2012) | NCSM 27267 | 116,065 | 1140 |
Dichogaster sp. Benhamiidae | France, Guadeloupe, Basse Terre (colls. S. James, F. Gamiette Feb 2013) | NCSM 27268 | 106,438 | 1152 |
Dichogaster saliens Benhamiidae | France, Guadeloupe, Chutes Carbet, Basse Terre (colls. S. James, F. Gamiette Feb 2013) | NCSM 00000 | 98,665 | 999 |
Drawida sp. Moniligastridae | USA, Tonganoxie, Kansas (coll. S. James? May 2013) | NCSM 27269 | 159,219 | 1081 |
Eisenia andrei Lumbricidae | Unknown | --- | 137,631 | 1217 |
Eisenia andrei Lumbricidae | Sweden, Södermanland, Vingåker, Valltrand, indoor compost, 59.0864 N, 16.0544 E (coll. E. Boräng, 1 Jan 2012) | SMNH 161292 in EtOH CE13945 | 168,836 | 1191 |
Eudrilus eugeniae Eudrilidae | Brazil, Sao Paulo, bait shop (coll. S. James, 7 Nov 2010) | NCSM 27270 | 85,990 | 1008 |
Fimoscolex sp. Glossoscolecidae | Brazil, Assistencia, São Paulo, Fazenda Sta Rosa (coll. S. James, 9 Nov 2012) | NCSM 27271 | 95,465 | 705 |
Gatesona chaetophora Lumbricidae | France, Aveyron, L’Hospitalet du Larzac (coll. S James, 1 Mar 2011) | NCSM 27272 | 104,334 | 961 |
Geogenia benhami Microchaetidae | South Africa, Western Cape, Stellenbosch (colls S. James, D. Plisko, 27 Aug 2011) | NCSM 27273 | 84,303 | 932 |
Glossodrilus sp. Glossoscolecidae | Brazil, Amazonas, near Manaus, Reserva Ducke (colls. S. James, S. Coral 1 Feb 2012) | NCSM 27274 | 122,993 | 1053 |
Glossoscolex sp. Glossoscolecidae | Brazil, Parana, Campina Grande do Sul, Caratuva peak trail (coll. S. James, M. Bartz, 17 Oct 2010) | NCSM 27275 | 58,411 | 722 |
Hemigastrodrilus monicae Hormogastridae | France, Aveyron, L’Hospitalet du Larzac (coll. S James, 1 Mar 2011) | NCSM 27276 | 103,338 | 1098 |
Hormogaster elisae Hormogastridae | SRA PRJNA196484a,Spain, El Molar, 40°44′22.9″N, 3°33′53.1″W | --- | 459,282 | 1234 |
Kerriona sp. Graciosa1 Ocnerodrilidae | Brazil, Parana, Graciosa Road (coll. S. James, 4 Nov 2010) | NCSM 27277 | 104,982 | 1010 |
Komarekiona eatoni Komarekionidae | USA, Sideling Hill Wildlife Mgmt. Area, Washington County, Maryland. (colls. S. James, M. Callaham, May 2013) | NCSM 27278 | 83,743 | 1151 |
Kynotus pittarelli Kynotidae | Madagascar, Antsirabe, 19°46′38.60″S 47°06′41.69″E | NCSM 00000 | 108,836 | 1073 |
Lutodrilus multivesiculatus Lutodrilidae | USA, Louisiana, Washington Parish (coll S. James, M. Callaham, M. Damoff, C. Erseus, 17 Jan 2011) | NCSM 00000 | 57,341 | 1049 |
Maoridrilus wilkini Acanthodrilidae | New Zealand, Kelly’s Creek (coll. T. Buckley) | NCSM 27279 | 80,910 | 861 |
Microchaetidae sp. | South Africa, Western Cape, Tokai Swamp (colls. S. James and D. Plisko, 29 Aug 2011) | NCSM 27280 | 194,638 | 1053 |
Microchaetus sp. Microchaetidae | South Africa, Northern Cape, Niewwoudtville (colls. S. James, D. Plisko 5 Sep 2011) | NCSM 27281 | 125,494 | 1093 |
Parachilota sp. Acanthodrilidae | South Africa, Western Cape, Table Mountain (coll. James, Meassey, Plisko, 26 Aug 2011) | NCSM 27282 | 102,971 | 1074 |
Place Kabary 2 sp. Acanthodrilidae | Madagascar, Place Kabary, Antsiranana, 12°16′58.27″S 49°17′25.94″E | NCSM 00000 | 146,018 | 1157 |
Pontodrilus litoralis Megascolecidae | USA, Cedar Point, Alabama (colls. S. James, C. Erséus 17 January 2011) | NCSM 00000 | 90,268 | 1189 |
Rhinodrilus priollii Rhinodrilidae | Brazil, Amazonas, Reserve Ducke (colls. S. James, S. Coral, 3 Feb 2012) | NCSM 00000 | 87,158 | 1102 |
Scherotheca savignyi Lumbricidae | France, Midi-Pyrénées, Ariège, Malegoude (coll. S. James, 2 Mar 2011) | NCSM 27283 | 113,157 | 1041 |
Sparganophilus sp. Sparganophilidae | USA, Iowa, Des Moines River, at Douds (coll. S. James 12 May 2012) | NCSM 27284 | 123,905 | 1199 |
Urobenus brasiliensis Rhinodrilidae | Brazil, Rio Grande do Sul, Santo Cristo (coll. G. Steffen 09 Sep 2009) | NCSM 27285 | 55,709 | 890 |
Vignysa popi Hormogastridae | France, Aveyron, Montpellier (colls. S. James, M. Bouche, 1 Mar 2011) | NCSM 27286 | 93,260 | 779 |
Outgroups | ||||
Delaya leruthi Haplotaxidae | France, Midi-Pyrénées, Ariège, Cazavet, L’Estelas Cave, in water, 43.000 N, 1.010 E (coll. M.C. des Chatelliers, P. Martin & N. Giani, 24 May 2011) (topotype) | SMNH 161293 in EtOH CE13924 | 118,020 | 1067 |
Pelodrilus sp. Haplotaxidae | Western Australia, 25.5 km S of Busselton, Rapids Conservation Park, Margaret River (coll. C. Erséus, 16 Sep 2012) | WAM V9004 | 100,864 | 1129 |
Haplotaxis gordioides Haplotaxidae | Sweden, Västergötland, Göteborg, seeping groundwater at Göteborg Botanical Garden (Vitsippsdalen), 57.6813 N, 11.9562 E (C. Erséus & A. Achurra, 29 Mar 2011) | SMNH 161294 in EtOH CE11200 | 53,878 | 855 |
?Haplotaxidae sp. | Brazil, Amazonas, Reserva Ducke (colls. S. James, S. Coral, 3 Feb 2012) (topotype) | NCSM 000000 in EtOH CE14372 | 93,548 | 1053 |
Lumbriculus variegatus Lumbriculidae | Sweden, Västergötland, Göteborg, Guldheden, spring S of Dr. Fries Torg, 57.6827 N, 11.9707 E (coll. M. Svensson, 8 Nov 2011) | SMNH 161295 slide CE13679 | 109,949 | 985 |
Propappus volki Propappidae | Sweden, Blekinge, Ronneby, Väby, Bräkneån River, sand in rapids, 56.1792 N, 15.1052 E (C. Erséus, B. Williams & S. Martinsson, 31 May 2013) (topotype) | SMNH 161296 slide CE18375 | 131,574 | 1140 |