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Table 4 Phylogenetic analysis statistics 1

From: Pan-genome and phylogeny of Bacillus cereus sensu lato

Analysis

Matrix

Partitioning scheme

Unique alignment

Best tree

Bootstrap

Nodes with

Nodes with

Nodes with

   

patterns

searches

replicates

B P=1.0

B P≥0.5

B P<0.5

ml_1

mat_1

all_nuc

46,395

1000

100

68

98

14

ml_2

mat_2

all_nuc

46,174

1000

100

68

93

19

ml_3

mat_3

all_nuc

44,750

1000

200

63

94

18

ml_4

mat_3

codon_pos

49,889

1000

200

64

92

20

ml_5

mat_4

all_nuc

11,729

1000

200

53

86

26

ml_6

mat_5

all_nuc

691,147

10

100

92

112

0

ml_7

mat_5

codon_pos

852,707

28

100

89

112

0

ml_8

mat_6

all_nuc

3,948,459

1

0

n/a

n/a

n/a

mp_1

mat_3

all_nuc

83,3832

n/a

n/a

n/a

n/a

n/a

  1. 1 ml = maximum likelihood; mp = maximum parsimony; BP = bootstrap probability; n/a = not applicable
  2. 2Number of parsimony-informative characters