Table 3 Precision (prec) and sensitivity (sens) as a function of the proportion of differentially selected sites (f) in condition 2, under model M1 and M2
From: Detecting consistent patterns of directional adaptation using differential selection codon models
Threshold | M1 | M2 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
f = 0.5 | f = 0.1 | f = 0.05 | f = 0.5 | f = 0.1 | f = 0.05 | |||||||
Prec | Sens | Prec | Sens | Prec | Sens | Prec | Sens | Prec | Sens | Prec | Sens | |
>0.50 | 26.7 | 53.5 | 4.7 | 47.0 | 2.8 | 56.4 | 2.5 | 49.7 | 5.3 | 53.0 | 25.5 | 51.1 |
>0.55 | 39.1 | 9.0 | 7.7 | 7.6 | 4.7 | 9.3 | 4.0 | 8.4 | 8.3 | 8.4 | 37.5 | 8.5 |
>0.60 | 47.0 | 6.1 | 10.0 | 4.9 | 6.3 | 6.0 | 5.6 | 5.4 | 10.9 | 5.3 | 45.2 | 5.2 |
>0.65 | 55.2 | 4.3 | 14.1 | 3.5 | 9.0 | 4.4 | 8.2 | 3.8 | 14.3 | 3.4 | 52.8 | 3.4 |
>0.70 | 67.0 | 2.9 | 21.9 | 2.4 | 15.8 | 3.2 | 12.1 | 2.1 | 21.3 | 1.8 | 63.8 | 1.9 |
>0.75 | 78.7 | 2.0 | 34.4 | 1.8 | 25.7 | 2.5 | 23.3 | 1.4 | 33.0 | 1.1 | 78.2 | 1.1 |
>0.80 | 84.1 | 1.5 | 50.8 | 1.4 | 35.2 | 1.8 | 33.0 | 0.7 | 44.8 | 0.6 | 86.5 | 0.7 |
>0.85 | 91.2 | 1.1 | 66.2 | 1.0 | 49.0 | 1.2 | 41.4 | 0.3 | 73.7 | 0.3 | 92.7 | 0.3 |
>0.90 | 93.5 | 0.8 | 81.7 | 0.7 | 68.3 | 0.6 | 33.3 | 0.1 | 90.9 | 0.1 | 100 | 0.1 |
>0.95 | 96.0 | 0.4 | 93.3 | 0.3 | 86.7 | 0.3 | 0.0 | 0.0 | 100 | 0.01 | 100 | 0.03 |