BMC Ecology and Evolution

Table 1 Fit of demographic models

From: Population genetic estimation of the loss of genetic diversity during horizontal transmission of HIV-1

Demographic Model				Coalescent
Recipient	Donor	lnLk ^b	AIC^c	ESS^d
env V1-V4
Constant	- ^a	-4155.385	8310.77	523.85
Constant	Constant	-4144.993	8291.99	419.77
Exponential	Constant	-4103.717	8211.43	643.10
Logistic	Constant	-4090.154	8186.31	126.43
gag p24
Constant	- ^a	-3118.180	6236.36	483.84
Constant	Constant	-3121.900	6245.80	440.34
Exponential	Constant	-3116.760	6237.52	378.33
Logistic	Constant	-3089.852	6185.70	202.69

^aPopulation size in Recipient constrained to be the same as that in Donor
^bNatural logarithm of the likelihood obtained from fitting the demographic model to the data
^cAkaike Information Criteria
^dEffective Sample Size (number of independent coalescent genealogies sampled from the posterior distribution)

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ISSN: 2730-7182

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