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Table 3 List of chloroplast DNA rearrangement characters. Numbers refer to tobacco cpDNA hybridization probes. Endpoints are given as novel probe adjacencies. Other rearrangement types are indicated as: T = transposition (T' = secondary transposition [14] of most of 53–56); I = inversion; i = insertion; D = deletion (or divergence); IRc and IRe = IR contraction or expansion, respectively (followed by single copy region affected). Characters marked with asterisks (*) are those rescored in Matrix 3 relative to Matrix 2.

From: Chloroplast DNA rearrangements in Campanulaceae: phylogenetic utility of highly rearranged genomes

*1. 11/60 22. T (53,54) 43. 40/56 64. i (15)
*2. 56/53 23. T (53–56) 44. 39/37 65. IRe (LSC)
*3. 49/37 24. 98/28 45. 37/44 66. T (5–8)
4. 40/35 25. 53/98 46. 56/61 67. T (6–9)
*5. 28/11 26. T' (53–56) 47. 76/96 68. i (9)
6. 15/76 27. 49/39 48. 77/106 69. i (18)
7. 60/27 *28. 37/40 49. i (5) 70. l (60–61)
*8. 26/44 29. 56/39 50. 39/25 71. T (28)
9. 41/47 30. 53/40 51. 9/37 72. T (16–17)
10. 48/36 31. 37/28 52. 48/56 73. i 7
11. 35/25 32. 40/26 53. 49/61 74. IRe (SSC)
12. 16/90 33. 27/44 54. 5/29 75. i (8)
13. T (93) 34. 8/40 55. 50/28 76. i (9)
14. 84/76 35. 39/26 56. 26/50 77. i (9)
15. 84/90 36. 27/11 57. 40/16 78. i (15)
16. 10/49 37. 56/36 58. 25/10 79. i (16)
17. 53/28 38. 44/10 59. 15/56 80. D (93)
18. 37/60 39. 9/53 60. IRc (LSC) 81. i (5)
19. 56/11 40. 49/36 61. IRe (SSC) 82. i (6)
20. I (16–17) 41. 8/36 62. IRe (LSC) 83. i (19)
21. 56/27 42. 9/40 63. D (45–46) 84. i (5)