From: A multilocus phylogeny reveals deep lineages within African galagids (Primates: Galagidae)
Locus | Length (bp) | Taxon coverage | Lorisoidea | Galagidae | Model | |||
---|---|---|---|---|---|---|---|---|
Lorisoidea (20) | Galagidae (14) | VS | PIS | VS | PIS | Â | ||
ABCA1 | 674 | 14 | 9 | 104 | 52 | 58 | 22 | GTR + I |
ADORA3 | 416 | 18 | 12 | 42 | 28 | 17 | 10 | HKY + G |
AFF2 | 510 | 19 | 13 | 43 | 28 | 27 | 17 | GTR + I |
APP | 714 | 17 | 13 | 40 | 20 | 20 | 8 | GTR + G |
ATXN7 | 565 | 19 | 14 | 72 | 47 | 42 | 21 | SYM + G |
AXIN1 | 951 | 19 | 13 | 67 | 33 | 32 | 12 | GTR + I + G |
BCOR | 789 | 19 | 13 | 69 | 51 | 48 | 34 | HKY + I + G |
CHRNA1 | 425 | 19 | 13 | 79 | 41 | 38 | 18 | HKY + G |
DACH1 | 630 | 19 | 13 | 114 | 47 | 59 | 18 | GTR + G |
DCTN2 | 635 | 19 | 13 | 76 | 46 | 47 | 19 | K80 + G |
DENND5A | 747 | 20 | 14 | 159 | 80 | 82 | 41 | HKY + G |
ERC2 | 793 | 17 | 11 | 139 | 86 | 60 | 33 | GTR + G |
FAM123B | 747 | 19 | 14 | 181 | 79 | 81 | 41 | SYM + G |
FBN1 | 735 | 20 | 14 | 53 | 29 | 23 | 7 | HKY + I |
GHR | 1295 | 14 | 10 | 164 | 90 | 96 | 33 | HKY + G |
KCNMA1 | 656 | 16 | 10 | 46 | 31 | 26 | 15 | GTR + I |
LRPPRC-171 | 819 | 18 | 13 | 103 | 52 | 45 | 25 | HKY + G |
LUC7L | 751 | 19 | 13 | 77 | 42 | 36 | 14 | HKY + G |
NPAS3.2 | 680 | 20 | 14 | 121 | 64 | 73 | 22 | GTR + G |
PNOC | 351 | 18 | 13 | 57 | 29 | 41 | 15 | HKY + G |
POLA1 | 658 | 20 | 14 | 71 | 37 | 47 | 21 | GTR + I |
RAG2 | 769 | 19 | 13 | 73 | 42 | 50 | 24 | HKY + G |
RPGRIP1 | 713 | 18 | 12 | 85 | 38 | 49 | 11 | HKY + G |
SGMS1 | 616 | 20 | 14 | 34 | 13 | 17 | 5 | GTR + I |
SIM1 | 670 | 20 | 14 | 42 | 18 | 26 | 12 | HKY + I |
SMCX | 365 | 18 | 14 | 56 | 21 | 42 | 12 | HKY + G |
ZIC3 | 574 | 19 | 13 | 40 | 14 | 18 | 2 | HKY + G |
TOTAL | 18248 | 18.4 (92.0%) | 12.8 (91.5%) | 2119 | 1150 | 1157 | 511 | Â |