From: Multigenic phylogeny and analysis of tree incongruences in Triticeae (Poaceae)
Locus | Alignment length (bp) | Genomic location | Relative distance to the centromere | Evolutionary rate | Shape parameter α | Proportion of variable sites | TD supermatrix | TDBUCKy |
---|---|---|---|---|---|---|---|---|
LOC_Os01g01790 | 860 | Chr. 3S, Tel. | 0.976 | 1.687 | 0.527 | 0.313 | 0.152 | 0.246 |
LOC_Os01g09300 | 861 | Chr. 3S, Tel. | 0.722 | 0.883 | 0.342 | 0.285 | 0.207 | 0.272 |
LOC_Os01g11070 | 1050 | Chr. 3S, Cen. | 0.652 | 1.033 | 0.380 | 0.305 | 0.299 | 0.264 |
LOC_Os01g13200 | 897 | Chr. 3S, Cen. | 0.568 | 0.659 | 0.270 | 0.220 | 0.140 | 0.173 |
LOC_Os01g19470 | 942 | Chr. 3S, Cen. | 0.352 | 0.906 | 0.687 | 0.321 | 0.104 | 0.109 |
LOC_Os01g21160 | 1017 | Chr. 3S, Cen. | 0.307 | 1.596 | 0.475 | 0.393 | 0.236 | 0.291 |
LOC_Os01g24680 | 1014 | Chr. 3S, Cen. | 0.184 | 0.875 | 0.805 | 0.260 | 0.371 | 0.395 |
LOC_Os01g37560 | 1005 | Chr. 3L, Cen. | 0.160 | 1.060 | 0.392 | 0.310 | 0.158 | 0.201 |
LOC_Os01g39310 | 945 | Chr. 3L, Cen. | 0.202 | 0.989 | 0.328 | 0.290 | 0.108 | 0.243 |
LOC_Os01g48720 | 939 | Chr. 3L, Cen. | 0.417 | 1.252 | 0.805 | 0.399 | 0.203 | 0.288 |
LOC_Os01g53720 | 1101 | Chr. 3L, Cen. | 0.526 | 0.921 | 0.521 | 0.320 | 0.170 | 0.170 |
LOC_Os01g55530 | 1068 | Chr. 3L, Cen. | 0.567 | 0.890 | 0.426 | 0.309 | 0.131 | 0.074 |
LOC_Os01g56630 | 915 | Chr. 3L, Cen. | 0.592 | 0.731 | 0.504 | 0.312 | 0.105 | 0.163 |
LOC_Os01g60230 | 999 | Chr. 3L, Cen. | 0.673 | 0.929 | 0.355 | 0.283 | 0.202 | 0.159 |
LOC_Os01g61720 | 935 | Chr. 3L, Tel. | 0.705 | 1.131 | 0.385 | 0.328 | 0.080 | 0.098 |
LOC_Os01g62900 | 951 | Chr. 3L, Tel. | 0.732 | 0.897 | 0.241 | 0.257 | 0.113 | 0.290 |
LOC_Os01g67220 | 1101 | Chr. 3L, Tel. | 0.827 | 1.303 | 0.414 | 0.322 | 0.238 | 0.245 |
LOC_Os01g68770 | 998 | Chr. 3L, Tel. | 0.862 | 1.307 | 0.631 | 0.278 | 0.287 | 0.272 |
LOC_Os01g70670 | 883 | Chr. 3L, Tel. | 0.898 | 0.899 | 0.404 | 0.310 | 0.105 | 0.210 |
LOC_Os01g72220 | 1131 | Chr. 3L, Tel. | 0.933 | 0.974 | 0.253 | 0.255 | 0.279 | 0.385 |
LOC_Os01g73790 | 966 | Chr. 3L, Tel. | 0.965 | 0.850 | 0.689 | 0.180 | 0.227 | 0.244 |
eIFiso4E | 630 | Chr. 1L, Cen. | NA | 0.952 | 1.004 | 0.128 | 0.221 | 0.430 |
CRTISO | 529 | Chr. 4L | NA | 1.165 | 0.807 | 0.163 | 0.347 | 0.329 |
PinA | 456 | Chr. 5S | NA | 1.375 | 0.243 | 0.189 | 0.506 | 0.382 |
PinB | 453 | Chr. 5S | NA | 2.411 | 0.264 | 0.218 | 0.297 | 0.303 |
PSY2 | 461 | NA | NA | 0.978 | 0.648 | 0.150 | 0.246 | 0.372 |
MATK | 1545 | Chloroplast | NA | 0.462 | 0.373 | 0.177 | 0.128 | 0.217 |