Skip to main content

Table 9 Pairwise comparisons between FLU and HIVb, HIVw, JTT, LG models.

From: FLU, an amino acid substitution model for influenza proteins

    #T1 > T2 #T2 > T1
M 1 M 2 #T1 > T2 (p< .05) (p< .05)
FLU (-F) HIVb (-F) 655/917 454 40
FLU (-F) HIVw (-F) 792/932 655 41
FLU (-F) JTT (-F) 890/938 710 6
FLU (-F) LG (-F) 921/935 868 5
FLU (+F) HIVb (+F) 627/916 412 83
FLU (+F) HIVw (+F) 701/932 540 78
FLU (+F) JTT (+F) 887/912 705 3
FLU (+F) LG (+F) 922/924 897 0
  1. T1 (T2) is the tree inferred using M1 (M2) model. #T1 > T2: the number of alignments where topologies of T1 and T2 are different and the likelihood of T1 is higher than the likelihood of T2 (the first number), and the number of alignments where topologies of T1 and T2 are different (the second number). #T1 > T2 (p < 0.05): special cases of #T1 >T2, where T1 is significantly better than T2. #T2 > T1 (p < 0.05): the same as #T1 > T2 (p < 0.5), but now T2 is significantly better than T1.