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Table 7 Comparisons of FLU and 14 other models in constructing maximum likelihood trees.

From: FLU, an amino acid substitution model for influenza proteins

  LogLK/site LogLK/site
  without F option (-F) with F option (+F)
FLU -10.51 -10.49
HIVb -10.65 -10.61
HIVw -10.71 -10.65
JTT -10.68 -10.63
LG -10.78 -10.82
cpREV -10.74 -10.93
WAG -10.78 -10.70
Dayhoff -10.89 -10.71
VT -10.89 -10.78
Blosum62 -10.92 -10.72
DCMut -10.89 -10.75
RtREV -10.89 -10.85
MtMam -11.36 -10.75
MtREV -11.23 -11.01
MtArt -11.42 -10.79
  1. FLU trees have the highest average likelihoods.