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Table 6 Comparisons of FLU and 14 other models in constructing maximum likelihood trees (+F option).

From: FLU, an amino acid substitution model for influenza proteins

  1st 2nd 3rd 4th 5th 6th 7th 8th 9th 10th 11th 12th 13th 14th 15th
FLU 635 123 202 19 5 2 2 1 2 0 1 0 0 0 0
HIVb 196 375 105 109 61 25 21 22 22 16 35 5 0 0 0
HIVw 148 146 290 73 36 41 22 11 17 56 36 93 19 3 1
JTT 6 168 218 540 23 20 9 5 1 2 0 0 0 0 0
MtREV 3 1 2 9 77 127 102 66 43 38 115 91 307 10 1
MtMam 2 4 6 7 52 62 53 60 42 62 39 92 71 343 97
WAG 1 166 124 52 33 96 146 130 89 63 55 25 12 0 0
CpREV 1 3 5 18 451 159 158 64 95 28 4 3 3 0 0
VT 0 3 11 21 34 35 46 80 83 135 73 101 206 151 13
LG 0 1 16 110 131 240 134 83 140 53 42 40 2 0 0
Dayhoff 0 1 11 19 60 93 151 227 145 147 91 28 13 5 1
Blosum62 0 1 1 3 1 2 5 11 25 20 115 192 106 203 307
DCMut 0 0 1 11 24 73 108 153 213 143 145 88 26 6 1
MtArt 0 0 0 1 3 1 5 4 4 5 12 32 137 219 569
RtREV 0 0 0 0 1 16 30 75 71 224 229 202 90 52 2
  1. The number on the cell of model M and column p indicates the number of alignments where M model stands at the rank p over 15 models tested. For example, FLU model stands at the first rank for 635 out of 992 alignments.