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Table 5 Comparisons of FLU and 14 other models in constructing maximum likelihood trees (-F option).

From: FLU, an amino acid substitution model for influenza proteins

  1st 2nd 3rd 4th 5th 6th 7th 8th 9th 10th 11th 12th 13th 14th 15th
FLU 680 129 147 19 2 4 4 4 1 1 1 0 0 0 0
HIVb 200 405 198 46 33 64 18 8 7 6 7 0 0 0 0
HIVw 91 115 200 178 64 58 144 20 29 16 16 61 0 0 0
JTT 14 274 290 398 14 0 1 0 1 0 0 0 0 0 0
LG 5 15 26 75 168 394 189 15 64 21 16 4 0 0 0
CpREV 2 25 54 204 542 112 13 20 8 7 4 1 0 0 0
WAG 1 28 70 55 134 278 357 43 25 1 0 0 0 0 0
Dayhoff 0 1 0 1 8 18 94 196 209 235 200 24 5 1 0
VT 0 0 3 9 17 30 74 226 192 164 178 71 24 4 0
Blosum62 0 0 3 7 8 18 28 103 84 139 95 436 24 47 0
DCMut 0 0 1 0 1 9 35 103 176 207 249 199 8 4 0
RtREV 0 0 0 0 1 5 29 234 175 174 190 157 14 13 0
MtMam 0 0 0 0 0 2 5 12 10 15 16 14 49 638 230
MtREV 0 0 0 0 0 0 1 8 11 6 20 25 849 69 3
MtArt 0 0 0 0 0 0 0 0 0 0 0 0 19 216 757
  1. The number on the cell of model M and column p indicates the number of alignments where M model stands at the rank p over 15 models tested. For example, FLU model stands at the first rank for 680 out of 992 alignments.