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Table 1 List of genes that lost their parental copy and the location on Muller's element in different species

From: Non-random genomic integration - an intrinsic property of retrogenes in Drosophila?

 

Dmel

Dsec

Dsim

Dyak

Dere

Dana

Dpse

Dper

Dwil

Dmoj

Dvir

Dgri

CG11164

A

A

A

A

A

A

A

A

A

C

C

C

CG11790

E

E

E

E

E

E

E

E

E

B

B

B

CG12375

B

B

B

B

B

B

A

A

A

A

A

A

CG1354

A

A

A

A

A

D

A

A

A

A

A

A

CG14286

E

E

E

E

E

-

A

A

A

A

A

A

CG14618

A

A

A

A

A

A

A

A

A

C

C

C

CG14779

A

A

A

A

A

E

A

A

A

A

A

A

CG1639

A

A

A

A

A

A

E

E

A

A (C)

A (C)

A (C)

CG16771

B

B

B

C/B

C/B

B

-

-

A

A

A

A

CG2059

A

A

A

A

A

B

A

A

A

A

A

A

CG2227

A

A

A

A

A

A

A

A

A

E

E

E

CG32441

D

D

D

D

D

D

D

D

D

E

E

E

CG33250

A

A

A

A

A

D

X

X

A

A

X

A

CG4918

E

E

E

E

E

A

A

A

A

A

A

A

CG5029

B

B

B

B

B

B

B

B

B

A

A

A

CG6284

E

E

E

E

E

E

B

B

B

B

B

B

CG8239

A

A

A

A

A

A

A

A

A

C

C

C

CG8939

A

-

A

A

A

D

X

X

A

A

A

A

CG9126

A

A

A

A

A

D

X

X

A

A

A

A

CG9172

A

A

A

A

A

A

A

A

A

C

C

C

CG9742

A

A

A

A

A

A

E

E

A

A

A

A

  1. Dmel:D. melanogaster; Dsec:D. sechellia; Dsim:D. simulans; Dyak: D. yakuba; Dere: D. erecta; Dana: D. ananassae; Dpse: D. pseudoobscura; Dper: D. persimilis; Dwil: D. willistoni; Dmoj: D. mojavensis; Dvir: D. virilis; Dgri: D. grimshawi; Bold and italicized font indicates retroposed copy; 'X' mark indicates that the chromosomal location is not assigned due to lack of flanking genes on the scaffold on which the gene is located; Muller's element A corresponds to the X-chromosome in all species. In D. pseudoobscura, D. persimilis, D. willistoni, Muller's element D represents XR chromosome. All other elements represent autosomes; '-' indicates that there is no hit for the gene in the corresponding species; The gene is not fully predicted in the respective species due to bad quality of the sequence; The gene CG1639 in these species possess two copies; Parental copy on the Muller's element A and retro copy on the Muller's element C. For the same gene, degenerated parental copies exist for species D. pseudoobscura and D. persimilis on Muller's element A.